DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and rpt-2

DIOPT Version :9

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_504558.1 Gene:rpt-2 / 178988 WormBaseID:WBGene00004502 Length:443 Species:Caenorhabditis elegans


Alignment Length:393 Identity:175/393 - (44%)
Similarity:262/393 - (66%) Gaps:24/393 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 RTRLMDNE-IK---IMKSEVIRITHEIQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEE 93
            |.:|:.:| ||   :|:.|.|:....::.|.|:.::...|:...:..|..|.::.|         
 Worm    62 RLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEE--------- 117

  Fly    94 EDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYD 158
                   ::|:|.    |::.|:....:::.::..||.|:|:||..|.:|..::.::..|..:.|
 Worm   118 -------IIDDQH----AIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTD 171

  Fly   159 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKT 223
            ..|..|::::.|.|.|:|:||||:||||:.|||.||:||.|.::.:||.|||||:|||.||||||
 Worm   172 PMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKT 236

  Fly   224 LLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 288
            |||:|.|.||.:|||::.|.:|:|.::|||.|:||:.|.:|:|.||:|:||||:||:||||:||.
 Worm   237 LLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSN 301

  Fly   289 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 353
            ..|:||:||||||||||||||.|..|:||:.||||::.|||||:|.||:|||||||.|:|:.:.|
 Worm   302 SGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRR 366

  Fly   354 IMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQA 418
            |.|||:.:|.:..:||.||...:.|:.:||..||:|.|||::|||.....||.|||..:...|..
 Worm   367 IFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLY 431

  Fly   419 KKK 421
            :||
 Worm   432 RKK 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 173/391 (44%)
rpt-2NP_504558.1 PTZ00361 1..443 CDD:185575 175/393 (45%)
Prot_ATP_ID_OB 112..>179 CDD:293059 18/86 (21%)
AAA 225..358 CDD:278434 86/132 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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