DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and rpt-6

DIOPT Version :10

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_499609.1 Gene:rpt-6 / 176661 WormBaseID:WBGene00004506 Length:416 Species:Caenorhabditis elegans


Alignment Length:410 Identity:185/410 - (45%)
Similarity:255/410 - (62%) Gaps:31/410 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ESLGEEVMRMSTDEIVSR----TRLMDNEIKIM-KSEVIRITHEIQAQNEKIKDNTEKIKVNKTL 75
            :.|.||     :||...|    |::.|.:.|:. ||:.:|   .:|||..::  ||:        
 Worm    19 QKLTEE-----SDEKTLRKYFSTKVDDAQQKVADKSQNVR---RLQAQRNEL--NTK-------- 65

  Fly    76 PYLVSNVIELLDVDPQEEEDDGS-VTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGDL 139
                   :.:|..:.|:..:.|| |..:......|..::|......|.:.|...:|...|..|..
 Worm    66 -------VRMLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGAR 123

  Fly   140 VGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKNL 204
            |.:..|||.:.:.||.:.|..|..|.|::.|...|..:|||||||:|:.|.:.||:.|.|.|..|
 Worm   124 VALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 188

  Fly   205 GIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 269
            ||..||||||:|||||||||||||.|..|:.||::::|.:|||.|||:||::||:.|.:|:|.||
 Worm   189 GIAQPKGVLLFGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAP 253

  Fly   270 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRS 334
            :|||:||:|:||:.|.:....||.||||||||||||||||.:|.:||||.||||:|||||||||.
 Worm   254 SIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRP 318

  Fly   335 GRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRR 399
            ||:|||||||.|:|:|||.|::|||||||:...:|..:::......:||:.|:||.||||.|||.
 Worm   319 GRIDRKIEFPAPDEKARADILKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAGMFALRE 383

  Fly   400 SANSVTHEDFMDAIMEVQAK 419
            ....||.|||..|:.:|..|
 Worm   384 RRIHVTQEDFEMAVGKVMQK 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 PRK03992 28..421 CDD:179699 182/398 (46%)
rpt-6NP_499609.1 PRK03992 52..410 CDD:179699 174/372 (47%)

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