DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and F56F11.4

DIOPT Version :9

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001367906.1 Gene:F56F11.4 / 175403 WormBaseID:WBGene00018991 Length:432 Species:Caenorhabditis elegans


Alignment Length:419 Identity:180/419 - (42%)
Similarity:256/419 - (61%) Gaps:45/419 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QTLED--KSIWEDGEESLGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIRITHEIQAQNEKIKDN 65
            |||..  |:..|..|:::.|:  .::...::::.:.::.:::::|.|:..: ||..:...::...
 Worm    44 QTLRPYFKTKVEQAEQTVAEK--SINVRRLMAQQKELNGKVRLLKEEISHL-HEQGSHVGEVCKA 105

  Fly    66 TEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVD 130
            .:|.||      ||.|            ..||.                      |.:.|...||
 Worm   106 MDKKKV------LVKN------------HPDGK----------------------YIVDVAASVD 130

  Fly   131 AEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPM 195
            ...|..|..|.:..|:|.|.|.||::.|..|..|.|::.|...|..:||||.||:|:.|.:.||:
 Worm   131 ISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPV 195

  Fly   196 THKEKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDA 260
            .|.|.|..|||..||||||||||||||||||||.|..|:.||::::|.:|||.|||:||::||:.
 Worm   196 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVREL 260

  Fly   261 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 325
            |.:|:|.||:|||:||:|:||:.|.:..:.||.||||||||||||||||.:|.:||||.||||:|
 Worm   261 FVMAREHAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 325

  Fly   326 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCV 390
            |||.||||.||:|||||||.|:|:|||:|::|||||||:...:..::::......:||:.|:||.
 Worm   326 ILDSALLRPGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCT 390

  Fly   391 EAGMIALRRSANSVTHEDFMDAIMEVQAK 419
            ||||.|||.....||.|||..|:.:|..|
 Worm   391 EAGMFALRERRIHVTQEDFEMAVGKVMQK 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 173/387 (45%)
F56F11.4NP_001367906.1 RPT1 51..430 CDD:224143 177/412 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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