DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and Psmc1

DIOPT Version :10

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_476464.1 Gene:Psmc1 / 117263 RGDID:621097 Length:440 Species:Rattus norvegicus


Alignment Length:398 Identity:183/398 - (45%)
Similarity:261/398 - (65%) Gaps:32/398 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 RTRLMDNE-IK---IMKSEVIRITHEIQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEE 93
            |.:|:..| ||   :|:.|.||...:::...||.::...|:...:..|..|..:.|::|      
  Rat    59 RLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIID------ 117

  Fly    94 EDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYD 158
                     ||.     |::.||....:::.::..||.:.|:||..|.:|...:.::..|..:.|
  Rat   118 ---------DNH-----AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168

  Fly   159 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKT 223
            ..|..|:|::.|.|.|:||||||.||||:.|:|.||:||.|.::.:||.|||||:||||||||||
  Rat   169 PLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233

  Fly   224 LLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 288
            |||:|.|.||.:|||::.|.:|:|.::|||.||||:.|.:|:|.||:|:||||:|||||||:||.
  Rat   234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN 298

  Fly   289 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 353
            ..|:||:||||||||||||||.|..|:|||.||||::.|||||:|.||:|||||||.|:|:.:.|
  Rat   299 SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKR 363

  Fly   354 IMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQA 418
            |.|||:.:|.:::||..::|..:.||.:||..||:|.|||::|||.....||:|||        .
  Rat   364 IFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF--------K 420

  Fly   419 KKKANLNY 426
            |.|.|:.|
  Rat   421 KSKENVLY 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 PRK03992 28..421 CDD:179699 180/391 (46%)
Psmc1NP_476464.1 PTZ00361 1..440 CDD:185575 183/398 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.

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