DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBP3 and ranbp3

DIOPT Version :9

Sequence 1:NP_651178.1 Gene:RanBP3 / 42804 FlyBaseID:FBgn0039110 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001004874.1 Gene:ranbp3 / 448196 XenbaseID:XB-GENE-495073 Length:522 Species:Xenopus tropicalis


Alignment Length:483 Identity:150/483 - (31%)
Similarity:215/483 - (44%) Gaps:134/483 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NNEASVETNCFRGGFTLKASRL--GGA----------------VLRPAVL-----------ANSS 39
            |:::..|..|  .||.||...|  |.|                |||||||           ..||
 Frog    85 NSDSEPEEKC--SGFRLKPPTLIHGQAPSAGLPSQKPKEQQRSVLRPAVLQAPQQKTFSAPGFSS 147

  Fly    40 GSNNSSTS--PSAGEDSALLNNPFLRESKDDDD--DEEVVATGSAAAESTGDKED---------- 90
            |:|..|.|  |||....|...:|.:.:...|.|  |...........:|:.|.|.          
 Frog   148 GTNGISLSSEPSASCPDAPAESPSIHQINSDADRKDSNAQTESCIVKDSSEDSEQGEQKTQQSFV 212

  Fly    91 --DDVDER----------PDPLTKLRSNGIERSSMFAAAKNN---------------MPNVQSSG 128
              .:|.:|          ||. .|:.|.|::     |.|:.|               .....|:.
 Frog   213 FGQNVRDRVKLGVQSKDSPDD-EKVGSQGVD-----APAQTNYFLQYISSSLENSTHKSEAASNK 271

  Fly   129 FVFGQNVHERVVAPNAEQVTAEPDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTE 193
            ||||||:.|||::|    ..|||.:|      |.:|                 :||:::.:::  
 Frog   272 FVFGQNMIERVLSP----PKAEPSSD------SNKE-----------------NSVLESGSES-- 307

  Fly   194 TSEAAASSSICSSSSNNKESAE--AKSLTDVAREYEESRAQKRKYEEVETFTGEEDEINIIDVSC 256
                       ||..|..|.:.  ::||.:.|..|.::.|::...|:||..||||.|.|::.:.|
 Frog   308 -----------SSLDNTPEKSNNISESLEESAAAYTKATAKRCLLEKVEVITGEEAESNVLQIQC 361

  Fly   257 KLFAF--LNSNWEERGRGSLRLND---AKDLRGDSRVVFRTSGNLRLLLNTKVWAAMVAERASQK 316
            |||.|  ::.:|.|||||.|||||   .:|....||:|.||.|:|||:||||:||.|..::||:|
 Frog   362 KLFVFDKVSQSWVERGRGLLRLNDMASTEDGLLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEK 426

  Fly   317 SLRLTAIDNSGV-VKIFLAMGRPADIAQLHKALSERIAKRKVSHPEECSVEEAKNGVASEAAASL 380
            |:|:||:|.... ||:||......|..||..||..||...: ||.|:.:..:....| .|.|.|:
 Frog   427 SIRITAMDTEDQGVKVFLISASSKDTGQLFAALHHRILALR-SHVEQEAEIKCPEPV-REVAQSI 489

  Fly   381 QPESTTHDDEDEDAAPGPSGA-ISAEAD 407
            :.:|    |:|:|... |||| :.|..|
 Frog   490 EEDS----DDDDDVLT-PSGANVGAPGD 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBP3NP_651178.1 RanBD_RanBP3 243..352 CDD:270001 56/114 (49%)
ranbp3NP_001004874.1 RanBD_RanBP3 348..463 CDD:270001 56/114 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8802
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 146 1.000 Inparanoid score I4322
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001968
OrthoInspector 1 1.000 - - otm48784
Panther 1 1.100 - - LDO PTHR23138
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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