DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBP3 and ranbp3a

DIOPT Version :9

Sequence 1:NP_651178.1 Gene:RanBP3 / 42804 FlyBaseID:FBgn0039110 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_021335245.1 Gene:ranbp3a / 394115 ZFINID:ZDB-GENE-040426-1132 Length:513 Species:Danio rerio


Alignment Length:472 Identity:150/472 - (31%)
Similarity:198/472 - (41%) Gaps:118/472 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SENNEASVETNCFRGGFTLKASRL--GGA----------------VLRPAVL----ANSSGSNNS 44
            :||:::..|....  ||.||...|  |.|                :|||.||    ..|...||.
Zfish    84 TENSDSEPEEKTV--GFRLKPPTLIHGQAPSAGVPSPKPKEAQRSILRPPVLQPPPVKSPPQNNI 146

  Fly    45 STSPSAG-----------------------EDSALLNNPFLRESKDDDDDEEVVATGSAA---AE 83
            |::.|.|                       |:|..|:...| |.:.||..|:..|...|:   .|
Zfish   147 SSNSSNGVKKLSDGGTECEGHSEASAAGTQENSESLDKSTL-EPETDDKPEQHGAQIDASFVFGE 210

  Fly    84 STGDK----EDDDVDERPDPLTKLRSNGIERSSMF------AAAKNNMPNVQSSGFVFGQNVHER 138
            :..|:    ...|..::.|.|....|.   .::.|      :|.|.:..|..|..||||||:.:|
Zfish   211 NMRDRAKVGNSLDSSQKADGLQTENSG---ETNYFLQCITPSAQKPDSSNANSVKFVFGQNMLDR 272

  Fly   139 VVAPNAEQVTAEPDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAAASSSI 203
            ||        |.|...|.|...|.:          |.|...|||.:.....||.|.|:       
Zfish   273 VV--------ALPKFTTDAPGGSRE----------SGSEMGLFSQLSSTQEQTVEKSD------- 312

  Fly   204 CSSSSNNKESAEAKSLTDVAREYEESRAQKRKYEEVETFTGEEDEINIIDVSCKLFAF--LNSNW 266
                 |.|||.|     :.|..:|..:.||...|.||..||||.|.|::.:.||||.|  |:.:|
Zfish   313 -----NMKESLE-----ESAARHEAHKPQKCLLERVEVRTGEESESNVLQMQCKLFVFEMLSQSW 367

  Fly   267 EERGRGSLRLND---AKDLRGDSRVVFRTSGNLRLLLNTKVWAAMVAERASQKSLRLTAIDNSGV 328
            .|||.|.|||||   ..|....||:|.||.|:||::||||:|..|..::||:||||:||||....
Zfish   368 VERGCGVLRLNDKTSTDDGTLQSRLVMRTQGSLRVILNTKLWPQMQVDKASEKSLRITAIDTEEQ 432

  Fly   329 -VKIFLAMGRPADIAQLHKALSERI-AKRKVSHPEECSVEEAKNGVASEAAASLQPESTTHDDED 391
             ||:||......|.|||..||..|| |.|.:|..|........:|           |.....|:|
Zfish   433 GVKVFLISSSSKDAAQLFAALHHRILALRSISGQESDGQPALPDG-----------EIIRFSDDD 486

  Fly   392 EDAAPGPSGAISAEADS 408
            |...| |:.|..|..:|
Zfish   487 ESRTP-PTAATPAPGNS 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBP3NP_651178.1 RanBD_RanBP3 243..352 CDD:270001 57/114 (50%)
ranbp3aXP_021335245.1 RanBD_RanBP3 342..457 CDD:270001 57/114 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590889
Domainoid 1 1.000 70 1.000 Domainoid score I9500
eggNOG 1 0.900 - - E1_KOG0866
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 143 1.000 Inparanoid score I4438
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001968
OrthoInspector 1 1.000 - - otm25477
orthoMCL 1 0.900 - - OOG6_107245
Panther 1 1.100 - - O PTHR23138
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3882
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.780

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