DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBP3 and Ranbp3l

DIOPT Version :9

Sequence 1:NP_651178.1 Gene:RanBP3 / 42804 FlyBaseID:FBgn0039110 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_038959469.1 Gene:Ranbp3l / 294789 RGDID:1307559 Length:520 Species:Rattus norvegicus


Alignment Length:402 Identity:114/402 - (28%)
Similarity:175/402 - (43%) Gaps:84/402 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VLRPAVL----ANSSGSNNSSTSPSAGEDSALLNNPFLRESKDDDDDEEVVATGSAAAESTGDKE 89
            |||||||    ..|.....::..|.|.:......|   .|.|..:.|..:::...:.|.|:    
  Rat   178 VLRPAVLQPSRTQSCQKGGTTLGPGASKTCETKEN---TEHKISEADSSLLSENLSNARSS---- 235

  Fly    90 DDDVDERPDP-LTKLRSNG--IERSSMFAAAKNNMPNVQSSGFVFGQNVHERVVAPNAEQVTAEP 151
               |....|| :::..|.|  .|....|.:.        ||.||||:|:.|||:  ..:::|..|
  Rat   236 ---VQMSTDPCISEAPSGGHPKEDECSFTSC--------SSDFVFGENMVERVL--GTQKLTQHP 287

  Fly   152 DADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAAASSSICSSSSNNKESAEA 216
                                             :||.:...|.| ..:.....:.:||:.|..:.
  Rat   288 ---------------------------------LQNLSYAKEKS-FKSLLKFPNVASNSAEPIKN 318

  Fly   217 KSLTDVAREYEESRAQKRKYEEVETFTGEEDEINIIDVSCKLFAF--LNSNWEERGRGSLRLNDA 279
            .||.:.|..:....:||...|:::..||||.|.|::.::||:|.|  ...:|.|||:|.|||||.
  Rat   319 ISLIESAAAFSSKPSQKCLLEKIDVITGEETEHNVLKINCKIFVFNKATQSWSERGQGVLRLNDT 383

  Fly   280 KDLRG---DSRVVFRTSGNLRLLLNTKVWAAMVAERASQKSLRLTAID-NSGVVKIFLAMGRPAD 340
            .....   .||::.|..|:|||:||:::||.|..:|||.||||:||.| ....:||||......|
  Rat   384 AGSECGTLQSRLIMRNQGSLRLVLNSRLWAQMRTQRASHKSLRITATDLEDDRIKIFLIQASAKD 448

  Fly   341 IAQLHKALSER-IAKRKVSHPEECSVEEAKNGVASEAAASLQPE-STTHDDEDEDAAPGPSGAIS 403
            |..|:.|:..| :|.|.:.       ::...|.|.:.|.::.|: |....|||||..        
  Rat   449 IGFLYAAIHHRLVALRSLG-------QQGDGGPAGKQADTVLPQVSGGSCDEDEDDI-------- 498

  Fly   404 AEADSYGPSPKK 415
            .:....||.|.:
  Rat   499 TQVTKTGPDPSR 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBP3NP_651178.1 RanBD_RanBP3 243..352 CDD:270001 51/115 (44%)
Ranbp3lXP_038959469.1 RanBD_RanBP3 345..460 CDD:270001 50/114 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8742
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001968
OrthoInspector 1 1.000 - - otm45696
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23138
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X7579
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.010

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