DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmgcr and HMG1

DIOPT Version :9

Sequence 1:NP_732900.1 Gene:Hmgcr / 42803 FlyBaseID:FBgn0263782 Length:920 Species:Drosophila melanogaster
Sequence 2:NP_177775.2 Gene:HMG1 / 843982 AraportID:AT1G76490 Length:642 Species:Arabidopsis thaliana


Alignment Length:481 Identity:241/481 - (50%)
Similarity:305/481 - (63%) Gaps:26/481 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   435 TIEDQSSANASTQTDLLPLRHRLVGPIKPPRPVQECLDILNSTEEGSGPAALSDEEIVSIVHAGG 499
            ||:|..              |||| ...||.|:.....:.|.....:......|||||..|..| 
plant   184 TIDDDD--------------HRLV-TCSPPTPIVSVAKLPNPEPIVTESLPEEDEEIVKSVIDG- 232

  Fly   500 THCPLHKIESVLDDPERGVRIRRQIIGSRAKMPVGR-LDVLPYEHFDYRKVLNACCENVLGYVPI 563
             ..|.:.:||.|.|.:|...|||:.:    :...|| ::.||.:.|||..:|..|||..:||:.|
plant   233 -VIPSYSLESRLGDCKRAASIRREAL----QRVTGRSIEGLPLDGFDYESILGQCCEMPVGYIQI 292

  Fly   564 PVGYAGPLLLDGETYYVPMATTEGALVASTNRGCKALSVRG--VRSVVEDVGMTRAPCVRFPSVA 626
            |||.||||||||..|.||||||||.|||||||||||:.:.|  ..:|::| ||||||.|||.|..
plant   293 PVGIAGPLLLDGYEYSVPMATTEGCLVASTNRGCKAMFISGGATSTVLKD-GMTRAPVVRFASAR 356

  Fly   627 RAAEAKSWIENDENYRVVKTEFDSTSRFGRLKDCHIAMDGPQLYIRFVAITGDAMGMNMVSKGAE 691
            ||:|.|.::||.||:..:...|:.:|||.||:.....:.|...|:||...|||||||||||||.:
plant   357 RASELKFFLENPENFDTLAVVFNRSSRFARLQSVKCTIAGKNAYVRFCCSTGDAMGMNMVSKGVQ 421

  Fly   692 MALRRIQLQFPDMQIISLSGNFCCDKKPAAINWIKGRGKRVVTECTISAATLRSVLKTDAKTLVE 756
            ..|..:...||||.:|.:|||||.||||||:|||:||||.||.|..|....:..||||....|||
plant   422 NVLEYLTDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAVIRGEIVNKVLKTSVAALVE 486

  Fly   757 CNKLKNMGGSAMAGSIGGNNAHAANMVTAVFLATGQDPAQNVTSSNCSTAMECWAENSEDLYMTC 821
            .|.|||:.|||:|||:||.||||:|:|:|||:||||||||||.||.|.|.||. ..:.:|::::.
plant   487 LNMLKNLAGSAVAGSLGGFNAHASNIVSAVFIATGQDPAQNVESSQCITMMEA-INDGKDIHISV 550

  Fly   822 TMPSLEVGTVGGGTGLPGQSACLEMLGVRGAHATRPGDNAKKLAQIVCATVMAGELSLMAALVNS 886
            ||||:|||||||||.|..|||||.:|||:||....||.||::||.||...|:|||||||:|:...
plant   551 TMPSIEVGTVGGGTQLASQSACLNLLGVKGASTESPGMNARRLATIVAGAVLAGELSLMSAIAAG 615

  Fly   887 DLVKSHMRHNRSSIAVNSANNPLNVT 912
            .||:|||::||||..::.|......|
plant   616 QLVRSHMKYNRSSRDISGATTTTTTT 641

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgcrNP_732900.1 2A060605 1..920 CDD:273339 241/481 (50%)
MMPL 133..263 CDD:304422
HMG-CoA_reductase_classI 489..897 CDD:153081 223/410 (54%)
HMG1NP_177775.2 HMG-CoA_reductase_classI 223..626 CDD:153081 223/410 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 410 1.000 Domainoid score I130
eggNOG 1 0.900 - - E1_COG1257
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H30994
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D907394at2759
OrthoFinder 1 1.000 - - FOG0002934
OrthoInspector 1 1.000 - - otm3565
orthoMCL 1 0.900 - - OOG6_101762
Panther 1 1.100 - - LDO PTHR10572
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1935
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.780

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