DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmgcr and hmgr-1

DIOPT Version :10

Sequence 1:NP_732900.1 Gene:Hmgcr / 42803 FlyBaseID:FBgn0263782 Length:920 Species:Drosophila melanogaster
Sequence 2:NP_498626.2 Gene:hmgr-1 / 176047 WormBaseID:WBGene00017268 Length:550 Species:Caenorhabditis elegans


Alignment Length:505 Identity:222/505 - (43%)
Similarity:296/505 - (58%) Gaps:50/505 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 IDEEHVEQEKDTENSAAVRTLLFTI-EDQSSANASTQTDLLPLRHRLVGPIKPP-RPVQECLDIL 474
            |.|.:.::||..      |..||:: ||..|             ...|.|||.. ....:|...:
 Worm    29 ICENYDQKEKPK------RKPLFSVGEDDDS-------------EEYVSPIKETCETGTQCKRDV 74

  Fly   475 NSTEEGSGPAALSDE--------------EIVSIVHAGGTHCPLHKIESVLDDPERGVRIRRQII 525
            ...|..||..:| ||              |.|.::..|  .....::||.. ..|:.:.|||..|
 Worm    75 EYPEIESGNRSL-DEISREWKECKDVTPGEAVRLLRRG--QAKSRELESRF-PAEQAIPIRRTFI 135

  Fly   526 GSRAKMPVGRLDVLPYEHFDYRKVLNACCENVLGYVPIPVGYAGPLLLDGET-YYVPMATTEGAL 589
            ..       :.:.|||..:||......|||||:||.|:|||.||||.|:|.: .|||||||||||
 Worm   136 NK-------KFENLPYLGYDYTLATECCCENVIGYTPVPVGVAGPLTLNGTSEIYVPMATTEGAL 193

  Fly   590 VASTNRGCKAL-SVRGVRSVVEDVGMTRAPCVRFPSVARAAEAKSWIENDENYRVVKTEFDSTSR 653
            :||||||...: :..||.:.:.:.||||||.|:||:...|...|.|:|:.||....:.||.|.||
 Worm   194 IASTNRGMNVIRAAGGVETSIFNSGMTRAPVVKFPTARDAVSMKRWLEHPENQDRARQEFQSCSR 258

  Fly   654 FGRLKDCHIAMDGPQLYIRFVAITGDAMGMNMVSKGAEMALRRIQLQFPDMQIISLSGNFCCDKK 718
            |.:||...|.:||...|:||.|.|||||||||:||..:..:|.:...||:|.:::||||.|.|||
 Worm   259 FAKLKSIDITIDGNLAYLRFDAHTGDAMGMNMISKSCDSTMRFLMENFPEMTVLALSGNLCVDKK 323

  Fly   719 PAAINWIKGRGKRVVTECTISAATLRSVLKTDAKTLVECNKLKNMGGSAMAGSIGGNNAHAANMV 783
            .||.||.:|||:.||.||.|....:...|:|..:.|......|...||:.||::||:||||||:|
 Worm   324 AAAKNWTEGRGRSVVAECLIPREVVTKTLRTTPEQLAYLTTTKLHIGSSRAGAVGGSNAHAANIV 388

  Fly   784 TAVFLATGQDPAQNVTSSNCSTAMECWAENSEDLYMTCTMPSLEVGTVGGGTGLPGQSACLEMLG 848
            .|:|:|||||.||.|:||.|||.||..|:  ::||::||:|.:|||||||||.|..|.||||.||
 Worm   389 AAIFIATGQDAAQVVSSSMCSTRMEVTAD--KNLYVSCTLPCVEVGTVGGGTILAPQRACLESLG 451

  Fly   849 VRGAHATRPGDNAKKLAQIVCATVMAGELSLMAALVNSDLVKSHMRHNRS 898
            ..|.:..:||.||::||:::.|||:||||||||||..::||.|||:.|||
 Worm   452 CAGPNKEQPGQNAERLAEVIAATVLAGELSLMAALTTNELVSSHMKLNRS 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgcrNP_732900.1 2A060605 1..920 CDD:273339 222/505 (44%)
hmgr-1NP_498626.2 HMG-CoA_reductase_classI 102..500 CDD:153081 198/409 (48%)

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