DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1a and gba

DIOPT Version :9

Sequence 1:NP_651172.1 Gene:Gba1a / 42796 FlyBaseID:FBgn0051148 Length:561 Species:Drosophila melanogaster
Sequence 2:XP_687471.3 Gene:gba / 559072 ZFINID:ZDB-GENE-100922-270 Length:518 Species:Danio rerio


Alignment Length:559 Identity:167/559 - (29%)
Similarity:270/559 - (48%) Gaps:57/559 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 MLVLGVLLVSAIGGQSESIPCKLIDAEHGK-VCVCTADYCDYLENPVLTDENEWFLISSSKQGLR 73
            :|:.|::..:....:.   .|..::..||. ||||.|.|||.|...||.|..::....|:|.|.|
Zfish     8 ILLAGIITTARADSKD---GCLALNFGHGSVVCVCNATYCDSLGRTVLPDAGQFLSYVSNKAGSR 69

  Fly    74 FSTTSDKFGKEEKFTVQDYVEPTQETANATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRSK 138
            ...:..:|.|                                        :|....:.:.|:.|:
Zfish    70 LMESQGQFQK----------------------------------------NSTGAALRITLNPSQ 94

  Fly   139 THQKMVGFGGSYTGAVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWSYAE 203
            ..|.:.||||:.|.|....:.:.. |...|.|.:.:::.||:.:..:||.:..|||....::||:
Zfish    95 KFQHIKGFGGAMTDAAAINILSLS-SGAQDQLLRQYFSTDGIEYRFVRVPVASCDFSTRLYTYAD 158

  Fly   204 EEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPPWMKTNNRWTGFGRLK--- 265
            ...|.:|.:. .|...||.....:.:..:....:.|.:..:|||:|.|:|||....|.|.||   
Zfish   159 TPEDYDLQNF-TLAKEDVHMKIPLLQRAQALSAQPLYLFASAWSAPAWLKTNGALIGKGSLKGKP 222

  Fly   266 -RAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPLNGIIFMYFVKFMSLGWTPQTQAIWLNDYL 329
             ...::|||.|::|:|...:...:..|.:::||||..|.:..|  .|.:||:||:||..|:...|
Zfish   223 GGKEHKTWAQYYIRFLEEYRKYNLSFWGLTSGNEPTAGEMTNY--SFQALGFTPETQRDWIALDL 285

  Fly   330 GPTIRNSEFKDITLFGNDDQRYSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIF-GNSFIEQTK 393
            ||.:.:|.|....|...||.|...|||.|:: .:...:..|:.|:.:|||:|.:. .:..:..|.
Zfish   286 GPALHSSSFSKTQLMILDDNRLMLPHWAKVV-LSDIKAARYVHGIGVHWYFDRLVPPDVTLTSTH 349

  Fly   394 EYAPDKILIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNICLDEIGGPN 458
            ...||..|..:|:|.|..|..... .||||:|||.||.|.:.::.....||.|||:.|::.||||
Zfish   350 HLYPDYFLFATEACAGWSPVDRGV-RLGSWDRAEDYAHDIIQDLNNYVTGWTDWNLALNQDGGPN 413

  Fly   459 YVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVRID-AVPSNVNLDSVAFLRPDNKI 522
            :|.|.||:|:||:.:. :.|||||.||::.||||::.|.|.|:. :.....:|:..||:|||...
Zfish   414 WVKNFVDSPIIVDPSK-DIFYKQPTFYSMAHFSKFLWEESQRVGVSFSQQTSLEMSAFIRPDASA 477

  Fly   523 TAVLFNSGRADLDITLVDSIRGQFVVNVPAKSIHTLLYS 561
            ..::.|....::...:.|...|....:.|..||.|||::
Zfish   478 VLIILNRSEEEVPFEVWDQTVGFLPGSAPPHSILTLLWN 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1aNP_651172.1 Glyco_hydro_30 29..558 CDD:304972 162/535 (30%)
gbaXP_687471.3 Glyco_hydro_30 34..515 CDD:304972 161/527 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594223
Domainoid 1 1.000 245 1.000 Domainoid score I2141
eggNOG 1 0.900 - - E1_COG5520
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 297 1.000 Inparanoid score I2710
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - otm25617
orthoMCL 1 0.900 - - OOG6_102859
Panther 1 1.100 - - O PTHR11069
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3226
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.800

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