DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1a and gba-2

DIOPT Version :9

Sequence 1:NP_651172.1 Gene:Gba1a / 42796 FlyBaseID:FBgn0051148 Length:561 Species:Drosophila melanogaster
Sequence 2:NP_494208.2 Gene:gba-2 / 183155 WormBaseID:WBGene00016340 Length:516 Species:Caenorhabditis elegans


Alignment Length:580 Identity:158/580 - (27%)
Similarity:255/580 - (43%) Gaps:108/580 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDYLEN-PVLTDENEWFLISSSKQGL 72
            |:..|..|.|:...      .|.....:.|.||||...|||.:.: .:|:.:...|  ::||.|.
 Worm    11 GLFALASLQVALAN------DCAQKTFKTGIVCVCNITYCDEIPDINLLSGQAATF--TTSKSGA 67

  Fly    73 RFSTTSDKFGKEEKFTVQDYVEPTQETANATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRS 137
            |..              :|.|..|..           |.:....||::|               |
 Worm    68 RLH--------------RDVVYATNS-----------DPLTSMHFTIDS---------------S 92

  Fly   138 KTHQKMVGFGGSYTGAVEYLVENFKH--SELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWS 200
            ||:|.:.|||.:::.|..   .|.|.  .::||.:.:.::::.||.....||.|...||....::
 Worm    93 KTYQTIQGFGSTFSDASG---ANLKSLPDQMADTILRQYFSDSGLNLQFGRVPIASNDFSSRVYT 154

  Fly   201 YAEEEGDTELS----------------DMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSP 249
            |.:...|..::                .|.:...||:...|                  ..||:|
 Worm   155 YDDNLEDYNMAHFSLQREDYQWKIPYMQMAQKYNHDLKFFA------------------VPWSAP 201

  Fly   250 PWMKTNNRWTGFGRL----KRAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPLNGIIFMYFVK 310
            .|:||.|...|:|.|    :..|::::..|.|.:|...:.|||..|.:||.|||.:|....  .|
 Worm   202 GWLKTTNSTKGYGILLGTNQDTYHKSYVTYILHFLEEYQKNGILFWGLSTQNEPTSGSDKK--TK 264

  Fly   311 FMSLGWTPQTQAIWLNDYLGPTIRNSEF-KDITLFGNDDQRYSFPHWFKMMNRTRPNSIDYLDGL 374
            ..|:|:|.:.|..::...:||.:::|.. |::.:...||.|.:.|.|...:...: ::..|:.|:
 Worm   265 MQSMGFTAEFQRDFIKLDIGPALKSSNAGKNVKILILDDNRGNLPKWADTVLNDK-DAASYVSGI 328

  Fly   375 SLHWYWDEIFGNSFIEQTKEYAPDKILIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKL 439
            ::|.|.|: ..:..:.||....||..:..:|:..|.|.....   .||::|||.|..|.|.:...
 Worm   329 AVHSYQDD-ESDKHLTQTHNNHPDVFIFGTEASEGSKSKDVD---YGSFDRAEDYVSDILDDFNN 389

  Fly   440 GFHGWIDWNICLDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVRID-- 502
            ...||.:.|:.||..|||::|....|||||. .....:||||||||||.|||.::..|:||||  
 Worm   390 WVTGWTERNLVLDAQGGPSWVSGFADAPVIA-FPALAQFYKQPMFYAIAHFSHFLKPGAVRIDHS 453

  Fly   503 -AVPSNVNLDSVAFLRPDNKITAVLFNSG-RADLDITLVDSIRG--QFVVNVPAKSIHTL 558
             .:| |..::..|||.||.....||.|.. .|...:::.|:::.  .:.|::..|:|.||
 Worm   454 LNMP-NPEIERSAFLNPDGSKVVVLHNKNPLAPYSLSIKDTMKSTDHYQVHLSPKTIVTL 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1aNP_651172.1 Glyco_hydro_30 29..558 CDD:304972 152/558 (27%)
gba-2NP_494208.2 Glyco_hydro_30 23..515 CDD:110998 154/568 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166005
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 1 0.900 - - E1_COG5520
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.770

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