DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1a and gba-3

DIOPT Version :9

Sequence 1:NP_651172.1 Gene:Gba1a / 42796 FlyBaseID:FBgn0051148 Length:561 Species:Drosophila melanogaster
Sequence 2:NP_001255965.1 Gene:gba-3 / 178535 WormBaseID:WBGene00008706 Length:525 Species:Caenorhabditis elegans


Alignment Length:533 Identity:164/533 - (30%)
Similarity:265/533 - (49%) Gaps:64/533 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VCVCTADYCDYLENPVLTDENEWFLISSSKQGLRFSTTSDKFGKEEKFTVQDYVEPTQETANATI 104
            ||||.|.:||.:|......|.:..:..||..|.|....|.|.  :||                  
 Worm    41 VCVCNATFCDEIEPIGEIAEGKAIVYRSSLDGDRLKRMSMKM--KEK------------------ 85

  Fly   105 LSRLLDKVVDSAFTLESRESSITRTVTLRLDRSKTHQKMVGFGGSYTGAVEYLVENFKHSELADH 169
                          |...||.   .||:.:|.|:..|.:.||||::|.:......:...: |.::
 Worm    86 --------------LRKNESV---NVTITIDASERFQNIFGFGGAFTDSAGDQFVSLSET-LQNY 132

  Fly   170 LYKSFYAEDGLGFNLMRVSIGGCDFDLEPWSYAEEEGDTELSDMDELNAHDV-TRVAQIKRLIE- 232
            :..|::.::||.:|:.||.|..|||....:||.:...|.||... .|...|: .::..||:.|| 
 Worm   133 IVDSYFGKNGLEYNIGRVPIASCDFSTHEYSYDDVHDDFELKHF-ALPDEDLKLKIPFIKKAIEK 196

  Fly   233 VSGVKNLLVKGAAWSSPPWMKTNNRWTGFGRLK--RAYYQTWADYHLRWLRLMKDNGIPIWAIST 295
            ..|  |:.:..:.||:|.|||...|..|.|.::  :..||.:|||..::......:.|..|.::.
 Worm   197 TEG--NIQLFASPWSAPGWMKVTGRMRGGGAMRNDKRVYQAYADYFFKFFEAYSSHAITFWGLTI 259

  Fly   296 GNEPLNGIIFMYFVKFMSLGWTPQTQAIWLNDYLGPTIRNSEFKD-ITLFGNDDQRYSFPHWFKM 359
            .|||..|....:  ::.::.:|.:|...:|..||||.::.::..: :.:...||.|...|.|...
 Worm   260 QNEPSTGADMAW--RWQTMNYTAETMRDFLKKYLGPKLKENKLTETLKVMVLDDGRGLLPGWADT 322

  Fly   360 MNRTRPNSIDYLDGLSLHWYWDEIFGNSF-----IEQTKEYAPDKILIVSESCIGDKPWQAAAPL 419
            :... |.:..|.||:::|||     ||.:     ::.|:.:.|.|.:..:|:|.|  .:....|:
 Worm   323 IFND-PEATKYADGVAVHWY-----GNLYSPAVLLDITQRHHPTKFIFGTEACAG--YFGHHGPI 379

  Fly   420 LGSWERAEKYARDYLLNIKLGFHGWIDWNICLDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMF 484
            :|.|.|||.||.|.:.::.....||.|||:||||.||||:..|.||:|:|||.|. :||||||||
 Worm   380 MGDWFRAESYADDIITDLNHHVTGWTDWNLCLDETGGPNWAYNVVDSPIIVNRTA-QEFYKQPMF 443

  Fly   485 YAIGHFSKWVPEGSVRI-DAVPSNVNLDSVAFLRPDNKITAVLFNSGRADLDITLVDSIRG-QFV 547
            ||:|||||::|.||.|: ..:..|:.:.:.:.:....:...|:.:.....|...:|||..| ..|
 Worm   444 YALGHFSKFLPRGSTRVFTKIEGNLAVSATSVVIEGGRRATVILSKASNSLLTRIVDSSTGFSIV 508

  Fly   548 VNVPAKSIHTLLY 560
            :|:|.:||||:::
 Worm   509 LNLPPRSIHTVIW 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1aNP_651172.1 Glyco_hydro_30 29..558 CDD:304972 163/529 (31%)
gba-3NP_001255965.1 Glyco_hydro_30 28..521 CDD:304972 164/531 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166006
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 1 0.950 - 0 Normalized mean entropy S4252
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 1 0.900 - - OOG6_102859
Panther 1 1.100 - - O PTHR11069
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3226
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.890

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