DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1a and gba-4

DIOPT Version :9

Sequence 1:NP_651172.1 Gene:Gba1a / 42796 FlyBaseID:FBgn0051148 Length:561 Species:Drosophila melanogaster
Sequence 2:NP_500785.1 Gene:gba-4 / 177314 WormBaseID:WBGene00021160 Length:519 Species:Caenorhabditis elegans


Alignment Length:568 Identity:167/568 - (29%)
Similarity:280/568 - (49%) Gaps:61/568 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MFASRGMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDYLENPVLTDENEWFLISSS 68
            |..:..:.:|..|........::|:||..:..|:|.||.|.|.|||.:|........:..:.::|
 Worm     1 MILNISVSLLIFLAFYGFSSDAKSLPCSEVKKEYGIVCRCNATYCDTIEPLGTVTSGKAVVYTTS 65

  Fly    69 KQGLRFSTTSDKFGKEEKFTVQDYVEPTQETANATILSRLLDKVVDSAFTLESRESSITRTVTLR 133
            :.|.|.:.:..|.........:.||..||                                    
 Worm    66 RNGKRMNRSELKHTTSSTAKTKVYVNTTQ------------------------------------ 94

  Fly   134 LDRSKTHQKMVGFGGSYTGAVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEP 198
                 :.|.::|||.::|.|....::....: :.|.:.:.::::||||:...||.:...||....
 Worm    95 -----SFQPVMGFGAAFTDAAGINMKMLPQT-MQDQIIQQYFSDDGLGYVFGRVPMASTDFSTHE 153

  Fly   199 WSYAEEEGDTELSDMDELNAHDVT-RVAQIKRLIEVSGVKNLLVKGAAWSSPPWMKTNNRWTGFG 262
            :||.:.:.|.:|.:.: |...|:. ::..||:.:..||.| |.:....||||.||||:.|..|.|
 Worm   154 YSYDDVKFDFDLKNFN-LTVEDLQYKIPFIKKAMTASGGK-LKLFATPWSSPGWMKTSGRMVGAG 216

  Fly   263 RL----KRAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPLNGIIFMYFVKFMSLGWTPQTQAI 323
            .|    ...||||||.|.:::.......||..|:::..|||..||..::  |:.:|.:....:..
 Worm   217 ELLGDQNGKYYQTWAQYFVKFFEAYHAQGIDFWSLTPQNEPTTGIDPLW--KWQTLFFDASMERN 279

  Fly   324 WLNDYLGPTIRNSEF-KDITLFGNDDQRYSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIFGNS 387
            ::...|||.:.:|.. |::.:..|||||.:.|||..:: .|.|.:..|:.|:::|||.|.|...:
 Worm   280 FIKKLLGPALASSPVTKNLKIMINDDQRINLPHWPNVI-LTDPTAAQYVHGIAIHWYEDFIDPAT 343

  Fly   388 FIEQTKEYAPDKILIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNICLD 452
            .:.:|.|..||..|:.:|:|.|..|  |..|.||||.|||:||.|.:.::.....||:|||..||
 Worm   344 VLTETHEKFPDYFLLATEACAGYFP--ADGPKLGSWSRAEQYANDLIKDMGNWVGGWVDWNYILD 406

  Fly   453 EIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVR--IDAVPSNVNLDSVAF 515
            ..||||...|.||:.:|||.|. :|:||||:::.:..|||:|..|::|  |:.:..:|:::.::|
 Worm   407 LQGGPNLAKNFVDSTIIVNATA-QEYYKQPIWHVMAQFSKFVKPGAIRVGINIIEKSVDVEGLSF 470

  Fly   516 LRPDNKITAVLFNSGRA---DLDITLVDSIRGQFVVNVPAKSIHTLLY 560
            |..|...|.||.|....   |:.|:.|.:....:.:.:...|:.|::|
 Worm   471 LNQDGTKTVVLLNKNEVLSFDVAISDVSAPNVIYDLTIQPNSLITIVY 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1aNP_651172.1 Glyco_hydro_30 29..558 CDD:304972 161/539 (30%)
gba-4NP_500785.1 Glyco_hydro_30 26..516 CDD:304972 161/539 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166004
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 1 0.900 - - E1_COG5520
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 1 0.950 - 0 Normalized mean entropy S4252
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 1 0.900 - - OOG6_102859
Panther 1 1.100 - - O PTHR11069
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3226
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.750

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