DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1a and gba-1

DIOPT Version :9

Sequence 1:NP_651172.1 Gene:Gba1a / 42796 FlyBaseID:FBgn0051148 Length:561 Species:Drosophila melanogaster
Sequence 2:NP_001040750.1 Gene:gba-1 / 173574 WormBaseID:WBGene00016335 Length:523 Species:Caenorhabditis elegans


Alignment Length:584 Identity:163/584 - (27%)
Similarity:259/584 - (44%) Gaps:94/584 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGKMFASRGMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDYLENPVLTDENEWFLI 65
            |...|..:..:.|.|..|.::    .:..|.....:.|.||||:.|.||.:. |:.....:..|.
 Worm     1 MKSRFLLKIFIFLAVFGVDSV----RAADCTEKTFKTGTVCVCSLDSCDEIP-PLDITMGQAALY 60

  Fly    66 SSSKQGLR------FSTTSDKFGKEEKFTVQDYVEPTQETANATILSRLLDKVVDSAFTLESRES 124
            ::|..|.|      ::|.::.||                                          
 Worm    61 TTSHTGARLHRDVIYATDTEPFG------------------------------------------ 83

  Fly   125 SITRTVTLRLDRSKTHQKMVGFGGSYTGAVEYLVENFKH--SELADHLYKSFYAEDGLGFNLMRV 187
                |:.:.:|.||.:|.:.|||.:::.|..   .|.|.  .:|:|.:.|.::::.||.....||
 Worm    84 ----TLHMTIDSSKKYQTIQGFGSTFSDASG---ANLKSLPDKLSDLIMKQYFSDTGLNLQFGRV 141

  Fly   188 SIGGCDFDLEPWSYAEEEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPPWM 252
            .|...||....:||.:...|..:.:.:........::..||...:.:  .||.:..|.|::|.|:
 Worm   142 PIASTDFSGRVYSYNDVANDYSMQNFNLTKEDFQWKIPYIKNAQKYN--PNLKLFAAPWAAPGWL 204

  Fly   253 KTNNRWTGFGRLKRA----YYQTWADYHLRWLRLMKDNGIPIWAISTGNEPLNGIIFMYFVKFMS 313
            ||....||.|.|...    |:|.:|.|.:|:|.....:||..|.:||.|:|..|.....  |..|
 Worm   205 KTTKEMTGPGALNGKAGDNYHQAYAKYFVRFLEEYGKSGISFWGLSTQNQPTLGSDKKN--KIQS 267

  Fly   314 LGWTPQTQAIWLNDYLGPTI-RNSEFKDITLFGNDDQRYSFPHWFKMMNRTRPNSID---YLDGL 374
            ..:|.:||..::...|||.: .:|..||:.|...||.|.:.|.|..    |..|.:|   |:.|:
 Worm   268 TLFTAETQRDFIKTDLGPALAASSSGKDVKLLILDDNRGNLPKWAD----TVLNDMDAAKYVGGI 328

  Fly   375 SLHWYWDEIFGNSFIEQTKEYAPDKILIVSESC--IGDKPWQAAAPLLGSWERAEKYARDYLLNI 437
            .:|.|.|....| .:::|.:..|:..::.:|:.  .|.|.....   .|:|:||...|.|.|.|:
 Worm   329 GVHAYQDGETDN-HLDETHKKHPNFFILGTEASEGYGSKDTHVD---YGNWDRAADTASDILDNM 389

  Fly   438 KLGFHGWIDWNICLDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVRID 502
            .....||.:.|:.||.:|||::|.:..|||||. .....:||||||||||.|||.::..|:||||
 Worm   390 NNWMTGWTERNLILDALGGPSWVSDYTDAPVIA-FPAMAQFYKQPMFYAIAHFSHFIKPGAVRID 453

  Fly   503 AVPSNVNL--DSVAFLRPDNKITAVLFNSGR-ADLDITLV-----DSIRGQFVVNVPAKSIHTL 558
            ...:.:.|  ::.|||.||.....|:.|.|. ...:.|:|     || |..:...:|.::|.||
 Worm   454 HSLNVIELEVETTAFLNPDGSKVIVMLNKGSLVSTEHTVVVQDAADS-RNHYHFTLPHRAITTL 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1aNP_651172.1 Glyco_hydro_30 29..558 CDD:304972 156/554 (28%)
gba-1NP_001040750.1 Glyco_hydro_30 23..519 CDD:110998 158/558 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166007
Domainoid 1 1.000 225 1.000 Domainoid score I1442
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I1794
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62715
OrthoDB 1 1.010 - - D206521at33208
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - mtm4803
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.910

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