DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gba1a and Gba

DIOPT Version :9

Sequence 1:NP_651172.1 Gene:Gba1a / 42796 FlyBaseID:FBgn0051148 Length:561 Species:Drosophila melanogaster
Sequence 2:NP_001070879.1 Gene:Gba / 14466 MGIID:95665 Length:515 Species:Mus musculus


Alignment Length:560 Identity:177/560 - (31%)
Similarity:281/560 - (50%) Gaps:63/560 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VLGVLLVSAIGGQSESIPCKLIDAEHG---KVCVCTADYCDYLENPVLTDENEWFLISSSKQGLR 73
            ::|..|..|:.....:.||  |....|   .||||.|.|||.|:...|.....:....|:::|.|
Mouse     5 LIGFFLFQAVSWAYGAQPC--IPKSFGYSSVVCVCNASYCDSLDPVTLPALGTFSRYESTRRGRR 67

  Fly    74 FSTTSDKFGKEEKFTVQDYVEPTQETANATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRSK 138
            ...:               |...|.....|.|                         .|.|...|
Mouse    68 MELS---------------VGAIQANRTGTGL-------------------------LLTLQPEK 92

  Fly   139 THQKMVGFGGSYTG--AVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWSY 201
            ..||:.||||:.|.  |:..|..:....:|   |.:|:::.:|:.:|::||.:..|||.:..::|
Mouse    93 KFQKVKGFGGAMTDATALNILALSPPTQKL---LLRSYFSTNGIEYNIIRVPMASCDFSIRVYTY 154

  Fly   202 AEEEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPPWMKTNNRWTGFGRLK- 265
            |:...|.:||:..........::..|.:.:::|. :.:.:..:.|:||.|:|||.|..|.|.|| 
Mouse   155 ADTPNDFQLSNFSLPEEDTKLKIPLIHQALKMSS-RPISLFASPWTSPTWLKTNGRVNGKGSLKG 218

  Fly   266 ---RAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPLNGIIFMYFVKFMSLGWTPQTQAIWLND 327
               ..::||||:|.:::|......|:..||::..|||..|:...|  .|..||:||:.|..:::.
Mouse   219 QPGDIFHQTWANYFVKFLDAYAKYGLRFWAVTAENEPTAGLFTGY--PFQCLGFTPEHQRDFISR 281

  Fly   328 YLGPTIRNSEFKDITLFGNDDQRYSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIF-GNSFIEQ 391
            .|||.:.||. .|:.|...||||...|.|.::: .:.|.:..|:.|:::|||.|.:. ..:.:.:
Mouse   282 DLGPALANSS-HDVKLLMLDDQRLLLPRWAEVV-LSDPEAAKYVHGIAVHWYMDFLAPAKATLGE 344

  Fly   392 TKEYAPDKILIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNICLDEIGG 456
            |....|:.:|..||:|:|.|.|:.:. .||||:|..:|:...:.|:.....||.|||:.|:..||
Mouse   345 THRLFPNTMLFASEACVGSKFWEQSV-RLGSWDRGMQYSHSIITNLLYHVTGWTDWNLALNPEGG 408

  Fly   457 PNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVRIDAVPS-NVNLDSVAFLRPDN 520
            ||:|.|.||:|:||:... :.||||||||.:|||||::||||.|:..|.| :.:|::||.||||.
Mouse   409 PNWVRNFVDSPIIVDIPK-DAFYKQPMFYHLGHFSKFIPEGSQRVALVASESTDLETVALLRPDG 472

  Fly   521 KITAVLFNSGRADLDITLVDSIRGQFVVNVPAKSIHTLLY 560
            ....|:.|....|:.:|:.|...|......|..||||.|:
Mouse   473 SAVVVVLNRSSEDVPLTISDPDLGFLETVSPGYSIHTYLW 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gba1aNP_651172.1 Glyco_hydro_30 29..558 CDD:304972 172/539 (32%)
GbaNP_001070879.1 Glyco_hydro_30 20..512 CDD:304972 173/543 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848703
Domainoid 1 1.000 235 1.000 Domainoid score I2352
eggNOG 1 0.900 - - E1_COG5520
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 287 1.000 Inparanoid score I2813
Isobase 1 0.950 - 0 Normalized mean entropy S4252
OMA 1 1.010 - - QHG62715
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004266
OrthoInspector 1 1.000 - - otm42800
orthoMCL 1 0.900 - - OOG6_102859
Panther 1 1.100 - - O PTHR11069
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3226
SonicParanoid 1 1.000 - - X3004
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.740

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