DRSC/TRiP Functional Genomics Resources

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Protein Alignment VAChT and slc18a2

DIOPT Version :9

Sequence 1:NP_477138.1 Gene:VAChT / 42795 FlyBaseID:FBgn0270928 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_001005688.1 Gene:slc18a2 / 448192 XenbaseID:XB-GENE-940058 Length:484 Species:Xenopus tropicalis


Alignment Length:513 Identity:156/513 - (30%)
Similarity:259/513 - (50%) Gaps:78/513 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IQEPVNQRRLILVIVSIALLLDNMLYMVIVPIIPDYLREIG------------------------ 64
            ::|..:.|..||.::::|:::|.:|:.::.||.|..|.:|.                        
 Frog    10 LKEKCDSRWPILFVITVAMIVDCVLFTIVAPIAPAILYDIEYGKGNTTFQNSSGSSSAYPISSYS 74

  Fly    65 -----SFDDGPTPPPLRDNITGKIIPVHHD---HHG------QDSATGILFASKAIVQLMVNPFS 115
                 |..|..:..|..|.||.......:.   :.|      |:...|:|.|.|||:||:.||..
 Frog    75 SLSNLSLFDNSSKEPYHDRITNSTESPGNKRKCYEGTEYLKEQNVRVGLLLAIKAILQLLTNPIV 139

  Fly   116 GGLIDKIGYDLPMMIGLTIMFFSTAVFACGSSYSVLFFARSLQGAGSAFADTAGLAMIADRFTEE 180
            |.||::.|||.|:..|..|:|.|:.:||..:||:.|..||.|||.||:|...:.:.|:|..|.::
 Frog   140 GKLINRTGYDAPLFCGFFIVFLSSLMFAFANSYAFLCVARGLQGIGSSFTMVSAMGMLAHVFPDD 204

  Fly   181 NERSQALGIALAFISFGCLVAPPFGGALYQFAGKEVPFLILALVCLLDGLMLLLVMKPVKEAMKQ 245
            .||.:|:|||::.::.|.|...|||..:|:|.||..|||.:.::.||||::.|.:::|.|     
 Frog   205 AERGKAMGIAMSGVAIGILAGAPFGSVMYEFVGKASPFLAIGVLALLDGVLQLFILRPTK----- 264

  Fly   246 SKDVQDQVIPIWRLLMDPYIAVCAGALTMSNVALAFLEPTISLWMEDNMTTDNWKIGMVWLPAFF 310
            ...:.....|...|::||||.|.|..|.::|:....|||||.:.|.:.|....:::|:.:||:..
 Frog   265 FTPLAIPPTPYRDLVLDPYIMVTAVGLCIANLTFGMLEPTIPIRMMETMCAPRYQLGLSFLPSVI 329

  Fly   311 PHVLGVVITVKMARKYPQHQWLMAAGGLALEGFSCFIIPFCSGYKMLMLPICVICFGIALIDTAL 375
            .:.:.:.....:|:|.  .:||....|:.::|.....:|.......|:.|...:.||..|::|::
 Frog   330 TYFICLNAFSGLAQKI--GRWLCIMIGMIIQGIGVMFLPLALNIFGLIGPDAALGFGFGLMETSV 392

  Fly   376 LPTLGYLVDVRYVSVYGSIYAIADISYSIAYAVGPIIAGGVVEAIGFTALNFLIAFSNLAYVPVL 440
            :|.:.:|||:|:.|.||.||||:||:..|.||:||...|.:.:|:|||.|..|:...|:.|.|:.
 Frog   393 MPLMAHLVDLRHTSNYGGIYAISDIALCIGYALGPSCGGAIAKALGFTWLMILLGLLNILYAPIF 457

  Fly   441 RKLRNIYDFKPFENEANILMQDPPNKEYQTYVMHDQKPVEGGVKNHLEYGQQYQQEQE 498
                             ||:::||.||       :.|||         ...:.:||:|
 Frog   458 -----------------ILLRNPPGKE-------ETKPV---------LNPEEKQEEE 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VAChTNP_477138.1 MFS_1 88..410 CDD:284993 114/330 (35%)
2_A_01_02 98..238 CDD:273318 60/139 (43%)
slc18a2NP_001005688.1 MFS_1 121..427 CDD:311564 112/312 (36%)
2_A_01_02 122..263 CDD:273318 60/140 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 1 1.010 - - D406900at33208
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.930

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