DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10252 and cimap1b

DIOPT Version :10

Sequence 1:NP_651171.1 Gene:CG10252 / 42794 FlyBaseID:FBgn0039104 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_956252.1 Gene:cimap1b / 335524 ZFINID:ZDB-GENE-030131-7464 Length:257 Species:Danio rerio


Alignment Length:242 Identity:75/242 - (30%)
Similarity:111/242 - (45%) Gaps:40/242 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPGPGAYKVDKLTRYGTSKGLEFSM 72
            ||| .|.||...|.:.||.|.|:.|.:|||:|......:..||||......:||.|......:|:
Zfish    27 PGP-TYALPGATGMNNHDPRMQKGPAFSFGIRHHNFHGNYSPGPGYLVPSNITRVGRDGTPAYSV 90

  Fly    73 APRTNVIDKRSSPGPGAHDVHNRPFFKGVNAPSYSMGLRTDFNFKKD-GPGPNAYKYEVNAVRPG 136
            ..|...|....:||||::...|......::.|::::..||.. |:.| .|||.||      :.|.
Zfish    91 YGRRKDIQPFQTPGPGSYSPENATKATYLSPPAFTLSARTKL-FRNDQTPGPAAY------MLPP 148

  Fly   137 VPSYSMGLQTKILNKTN---------------------SPGPAAYGGGDINVKLTRAPIYSMQPR 180
            |      |..|::|||:                     :|||..|...|..|...:.|.|||..|
Zfish   149 V------LGPKVVNKTSAPNVSFSGRSAIGSFHEDLRKTPGPGTYQVVDPCVYKHKGPQYSMTGR 207

  Fly   181 TTIPGE---NVGPGPNYYDLMYYRPGKSGPGYSFGVRHHQFAPPMIV 224
            ..:||:   ..|||.:|.:::.:...|: |.:|||:||.::..|.||
Zfish   208 NMMPGDMTKKPGPGAHYPEMVCFTRAKA-PSFSFGIRHSEYIAPTIV 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10252NP_651171.1 None
cimap1bNP_956252.1 STPGR 1 103..129 6/25 (24%)
STPGR 2 182..207 10/24 (42%)
STPGR 3 218..243 9/25 (36%)

Return to query results.
Submit another query.