DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10254 and ubc-20

DIOPT Version :9

Sequence 1:NP_651170.1 Gene:CG10254 / 42793 FlyBaseID:FBgn0027512 Length:1398 Species:Drosophila melanogaster
Sequence 2:NP_497174.1 Gene:ubc-20 / 175185 WormBaseID:WBGene00006715 Length:199 Species:Caenorhabditis elegans


Alignment Length:223 Identity:50/223 - (22%)
Similarity:81/223 - (36%) Gaps:72/223 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1126 VQREYLMLKSSLPN------GVVVRAYEDRMDLMSVMMVGPKRTPYQNALFFFDFQFGRDYPKSP 1184
            :|||   .|..:.|      |:::....:.:..:...:.||..|||...:|..|.:....||.||
 Worm     9 LQRE---CKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSP 70

  Fly  1185 PVCHYISYCTDRLNPNL-YEGGRVCVSLLGTWMGRDNEVWSPSSTMLQVLVSIQGLILVDEPYYN 1248
            |   .:.:.|...:||: .:.|.:|:.:|       .:.|:.|.|:..||:|||.|:...||   
 Worm    71 P---NVKFSTKIWHPNVSSQTGVICLDIL-------KDQWAASLTLRTVLLSIQALMCTPEP--- 122

  Fly  1249 EAGYEKQRGTQLGNENSRVYNEMAIIKIAQSTV--KQLTNPPLIFRNELIEHFKEFGTELYARMR 1311
                                      |..|..|  ||....|.:|:               |...
 Worm   123 --------------------------KDPQDAVVAKQYMEKPAVFK---------------ATAE 146

  Fly  1312 AWSEYSLEAQRQN------ITKIKDMPV 1333
            .|:....:...:|      :.|:|||.|
 Worm   147 YWTTKFAKGAVKNAGYQALVDKLKDMGV 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10254NP_651170.1 UQ_con 1126..1272 CDD:278603 35/152 (23%)
ubc-20NP_497174.1 UQ_con 8..149 CDD:365926 43/196 (22%)
UBA_II_E2_UBE2K_like 163..198 CDD:270498 5/12 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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