DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3d1 and AT4G20980

DIOPT Version :9

Sequence 1:NP_524463.2 Gene:eIF3d1 / 42789 FlyBaseID:FBgn0040227 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001031683.1 Gene:AT4G20980 / 827845 AraportID:AT4G20980 Length:591 Species:Arabidopsis thaliana


Alignment Length:584 Identity:238/584 - (40%)
Similarity:344/584 - (58%) Gaps:72/584 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SFEKPTVQFNEKGWGPCELPDT--------------FKDVPYQPFSKNDRLGKICDWTNTSNNDK 63
            :||...|.||..||||.:..|.              ..:||:..||::|:||::.|||...:|..
plant     5 AFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRNLSNPS 69

  Fly    64 KYQN--------------KYASSFGTGIQYSYYHEEDETTFHLVDTARVQKPP------------ 102
            ...|              .:|...|.|:..|..:.:::..|.|||    .|||            
plant    70 ARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVD----GKPPPRPKFGPKWRFN 130

  Fly   103 --HQRGRFRNMRNSR-SGRGRNARGGLNTHGMTTLSGKNVKARDPRHGRGMGKKFGHRGPPPKMR 164
              |.|.:....|:.. ..:.|:|              :..:||..|..........|:.......
plant   131 PHHNRNQLPQRRDEEVEAKKRDA--------------EKERARRDRLYNNNRNNIHHQRREAAAF 181

  Fly   165 ESSVAVRADWASIEEMDFPRLIKLSLPNIKEGVDIVTCGTLEYYDKTYDRINVKNEKPLQKI-DR 228
            :|||.::.:|..:|::.|....|||. .::|..|::.||.||||::.:|||..|||:.|::. :|
plant   182 KSSVDIQPEWNMLEQIPFSTFSKLSY-TVQEPEDLLLCGGLEYYNRLFDRITPKNERRLERFKNR 245

  Fly   229 IVHTVTTTDDPVIRRLSK-TVGNVFATDAILATIMCSTRSNYSWDIVIEKVGDKVFMDKRDHTEF 292
            ....|||:||||||||:| ....|||||||||.:||:.||.|||||||::||:|:|.||||.::.
plant   246 NFFKVTTSDDPVIRRLAKEDKATVFATDAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQL 310

  Fly   293 DLLTVNESSVEPPTDDDSSCNSPRNLAIEATFINHNFSQQVL-KTGDQEPKYKFEESNPFISEDE 356
            |||:|:|:|.||..:.....||..:|.:||.:||.||||||| :.|.:|   .|:|:|||.:|.|
plant   311 DLLSVHETSQEPLPESKDDINSAHSLGVEAAYINQNFSQQVLVRDGKKE---TFDEANPFANEGE 372

  Fly   357 DIQVASVGYRYKKWELGSDIVLVARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLD 421
            :|  |||.|||::|:|..::.||||||...|... :.:..|:|:.||||:|.|. :||:|||||:
plant   373 EI--ASVAYRYRRWKLDDNMHLVARCELQSVADL-NNQRSFLTLNALNEFDPKY-SGVDWRQKLE 433

  Fly   422 TQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQ 486
            ||||||||.||:||..||||||.||:||.:|.:|:|:|||::||||..||||....:||.:||.|
plant   434 TQRGAVLATELKNNGNKLAKWTAQALLANADMMKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQ 498

  Fly   487 INLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ 550
            |||:..|.|||::.|:||.||..:|||:::|||:||.:|:|::|.:.|::|..::...:||..|
plant   499 INLNTSNMWGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEDEQVQ 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3d1NP_524463.2 eIF-3_zeta 14..528 CDD:282888 231/559 (41%)
AT4G20980NP_001031683.1 eIF-3_zeta 6..540 CDD:398661 231/559 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 397 1.000 Domainoid score I139
eggNOG 1 0.900 - - E1_KOG2479
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2782
Inparanoid 1 1.050 412 1.000 Inparanoid score I450
OMA 1 1.010 - - QHG53861
OrthoDB 1 1.010 - - D1030308at2759
OrthoFinder 1 1.000 - - FOG0004086
OrthoInspector 1 1.000 - - mtm989
orthoMCL 1 0.900 - - OOG6_102252
Panther 1 1.100 - - O PTHR12399
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2834
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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