DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Irk2 and irk-3

DIOPT Version :10

Sequence 1:NP_001287485.1 Gene:Irk2 / 42770 FlyBaseID:FBgn0039081 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001368607.1 Gene:irk-3 / 191696 WormBaseID:WBGene00002151 Length:384 Species:Caenorhabditis elegans


Alignment Length:328 Identity:110/328 - (33%)
Similarity:190/328 - (57%) Gaps:25/328 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 RRRAVFKNG-----DCNVVQKHLQRRRVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLFFALIW 155
            |.|.|.|:|     :..:.::..|..:.|:.::.:..:::..||...:.|.|.||:||..||:|:
 Worm    46 RARLVSKDGKTLLNNIQIPERFRQAYKWRYCRNWFHLIIECNWRTICILFLLGFIVSWTIFAVIY 110

  Fly   156 WLI--IYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQHTIGYGVRTTSPECPEAI 218
            ::|  :.|          ..::||    |::.:|...|.||||:|:|||||||:|..:..||.|.
 Worm   111 YVISRLKT----------VKKDES----CIANVDTLISAFLFSMESQHTIGYGLRYMTDLCPPAY 161

  Fly   219 FMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRAQTLLFSKHAVI---CQRDGTLSLMFRVGDMR-K 279
            ..:|.|.:.||.....:||||.||:.|.|:|.|.:.||:.|||   .:.|...:||.|:.|:: |
 Worm   162 LTLCVQCVVGVFLQTILAGIVIAKILRPKKRRQEMRFSRMAVIGPLDEHDKRPTLMIRLADIQEK 226

  Fly   280 SHIIGAGVRAQLIRTKSTKEGEVMTQYFTELEIGTDDSGSDLFFIWPMVIEHKIDENSPLYNLNA 344
            ..:..:.||..:..:|....|:.......::.:|.|.....:..:||:::.|.|:|:||||.::.
 Worm   227 LFLAESHVRLYMACSKINSRGDRELIGVKDMNVGYDSGWDRVLLLWPIIVRHVINEDSPLYGMSR 291

  Fly   345 TDMLQDKFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPVVLYNKDLQAYEIDYARFNET 409
            .::::..||:::.:||.||:||.:.|||:|::..|||||::|.|:||.|:.|..||:.|:.|::|
 Worm   292 ENIVKADFELIMTVEGIVEATGMTFQARTSFLPDEILWGYKFKPMVLMNEKLSKYEVHYSFFDQT 356

  Fly   410 TQV 412
            .:|
 Worm   357 ERV 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Irk2NP_001287485.1 IRK 100..246 CDD:460023 49/152 (32%)
IRK_C 253..424 CDD:465439 55/164 (34%)
irk-3NP_001368607.1 IRK 50..189 CDD:460023 49/152 (32%)
IRK_C 196..359 CDD:465439 54/162 (33%)

Return to query results.
Submit another query.