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Protein Alignment CG4374 and ham

DIOPT Version :10

Sequence 1:	NP_651146.2	Gene:	CG4374 / 42767	FlyBaseID:	FBgn0039078	Length:	772	Species:	Drosophila melanogaster
Sequence 2:	NP_724130.4	Gene:	ham / 35135	FlyBaseID:	FBgn0045852	Length:	1108	Species:	Drosophila melanogaster

Alignment Length:	851	Identity:	155/851 - (18%)
Similarity:	249/851 - (29%)	Gaps:	368/851 - (43%)

- Green bases have known domain annotations that are detailed below.

  Fly    64 HHQNHQQPP----------------HSHNGHNN--------------NNNNNNNHVQVVHQPITS 98
            ||....:.|                |....|||              :.:|...|::..|  :.:
  Fly   362 HHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSNLQRHIRAYH--VGA 424

  Fly    99 QSQQQSLCGGTRTNSNNMIHDGGGGGAGGGGGVVVPVGNRNGTSNGGDPTLQGYEFWHQDKDNSR 163
            :......||.|                             .|||:|    |:.::..|
  Fly   425 RCHPCPECGKT-----------------------------FGTSSG----LKQHQHIH------- 449

  Fly   164 LDSSSI--------------FEDLDRY------CWQQ----------QPVTTSASNGGSASTNQP 198
               ||:              |.:|.|:      |..|          ..:|:...:.....:..|
  Fly   450 ---SSVKPFACEVCSKAYTQFSNLCRHKRMHATCRMQIKCDKCNQSFSTLTSLTKHKKFCDSTGP 511

  Fly   199 SPTSPQGHLQQQQQHQQHQQLQQQQQ-----QQQQQQPNANSSSAASSGAGSSSDTISSLDTTDG 258
            .|...| |:.:..||.....|..|..     ......|...||.::||.|.::   ::::.|..
  Fly   512 GPYRNQ-HVNRHHQHPHQHPLPHQPHLAATATSTCPAPPRESSESSSSAAAAA---VAAMSTPP- 571

  Fly   259 QIYTLTVLNGGEPWLKRSESEQLPTSLDLDSLLGSFPGYIKSEYPYDDSGFSTDGKDVIGNGTDG 323
                       .|:|....:...            |||:    .||....|
  Fly   572 -----------NPFLMFRTAPSF------------FPGF----PPYGFPPF-------------- 595

  Fly   324 LSSISQPQNQGQQAQQTLPSLVTAISL----------AGGNDLGQQLAQF---------QNNNND 369
                 .|||         |...|.|.:          .||.::...::.|         :..|::
  Fly   596 -----LPQN---------PLHPTNIPMFFSKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENSE 646

  Fly   370 WHMADHNTE------TEQSTAESLLRSALQGKGYAKGLHMQNGLTMPVVKDEDMRRLLFADEAAA 428
            ....|..||      .|:...:..|..|.:|                   :||..|
  Fly   647 SQAYDKVTEKELVFKAEEKLKKEPLVQAFEG-------------------EEDESR--------- 683

  Fly   429 LGFADSTLSAAQMFDEAQGIHLSSQQQQQQQQ-------QQQQAHNGNANILV------------ 474
                 |:|......::.:....|.:|...:|:       .||||.:...:|.:
  Fly   684 -----SSLDIKGKLEDTRNDSKSEEQDDMKQEPERVSTPDQQQAEDDRKSIDIMSTPPPADTPSG 743

  Fly   475 ------------------------DDMFLSLENAFSDDFE-------KIKRIANEVQQFCS---- 504
                                    |::.|........:||       |:::..:..:...|
  Fly   744 GDGPLDLSICRKRSAGSFFTAPAEDNLMLHRFMPRLHEFEAERGQPLKMRKSHSSAESSTSQKSH 808

  Fly   505 AGSSGTPTPGDYVPSSDVLMQISPSPAVTSAGQLQPPQPLKPEVSTSTS---PTSAVVASAASNH 566
            .|||.|||     |::...:..||||..::.|:|.         |||..   ||.|..|.|| :|
  Fly   809 KGSSPTPT-----PTASPGLTPSPSPPTSAGGELS---------STSEGGAVPTMAAAAFAA-DH 858

  Fly   567 VRSGGGVVKP-----------KKAYKRSSSNNNNPNVANNNQSSGGNPLIAGSGSGSSSSSGSAS 620
            .....|...|           ::.|:     :..|.:.......|...|:||:.|       :|:
  Fly   859 SALASGPTLPQTHPTFHPLLLEEIYR-----SGFPFLCQPGGRRGIEALLAGAAS-------AAA 911

  Fly   621 SSSNSPPANSGGSSSSSSGSTQRKERSLHYCSICAKGFKDKYSVNVHIRTHTG------------ 673
            .....||..   .|:.|....:.|:|  :.|..|.|.|....::..|:|||||
  Fly   912 PKRPLPPVK---FSAGSVVGLKTKDR--YSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRA 971

  Fly   674 -----------------EKPFACSLCGKSFRQKAHLAKHYQTHMTQKNNGNIIKGGSGKHQRSSG 721
                             |:||.|.||.:||.|:.:|.:|.:.|.::.||           .|.|.
  Fly   972 FSISSNLQRHVRNIHNKERPFRCELCDRSFGQQTNLDRHVKKHESEGNN-----------FRDSP 1025

  Fly   722 SSAGSA 727
            ||:|.|
  Fly  1026 SSSGIA 1031

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.