DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42827 and appb

DIOPT Version :9

Sequence 1:NP_651142.3 Gene:CG42827 / 42763 FlyBaseID:FBgn0262009 Length:116 Species:Drosophila melanogaster
Sequence 2:NP_690842.1 Gene:appb / 170846 ZFINID:ZDB-GENE-020220-1 Length:694 Species:Danio rerio


Alignment Length:93 Identity:22/93 - (23%)
Similarity:36/93 - (38%) Gaps:28/93 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TILCIFCLATVILAIDMDSDS-----LQEQYEREQYNIRKKICLQSSEYGKCKGRRKLWFYNPKK 63
            |:..:..|.|:.|||::.||.     .:.|.......:...|.:||   ||       |..:|..
Zfish     6 TVFLLLMLTTLSLAIEVPSDDSVGLLAEPQVAMFCGKLNMHINVQS---GK-------WEPDPTG 60

  Fly    64 SKCQVFIYSNCGGNGNLFYTKESCVEFC 91
            :|       :|      ..|||..:::|
Zfish    61 TK-------SC------ISTKEGILKYC 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42827NP_651142.3 KU 40..92 CDD:238057 13/52 (25%)
appbNP_690842.1 A4_EXTRA 29..190 CDD:128326 14/70 (20%)
APP_N 33..133 CDD:280358 14/66 (21%)
APP_Cu_bd 135..190 CDD:289676
APP_E2 306..488 CDD:289677
Beta-APP 599..637 CDD:281491
APP_amyloid 640..690 CDD:287486
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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