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Protein Alignment CG4408 and Cpa5

DIOPT Version :9

Sequence 1:	NP_651141.2	Gene:	CG4408 / 42762	FlyBaseID:	FBgn0039073	Length:	479	Species:	Drosophila melanogaster
Sequence 2:	NP_653120.1	Gene:	Cpa5 / 74649	MGIID:	1921899	Length:	436	Species:	Mus musculus

Alignment Length:	411	Identity:	127/411 - (30%)
Similarity:	212/411 - (51%)	Gaps:	19/411 - (4%)

- Green bases have known domain annotations that are detailed below.

  Fly    78 QARYDHTRIYQVELASEEHVRLFQALE-QASDSCSFMGHARQPGQKLTIMVTGAKVADFDDLVHS 141
            |..:...::.:|...:|:.:.|.:.|| |......|.....:|...:.:.|..:::......:.|
Mouse    34 QVNFTGDQVLRVLAKNEKQLSLLRDLETQKPQKVDFWRGPARPSLPVDMRVPFSELPSVKAYLKS 98

  Fly   142 YNVTHRVLNYNFQALIDANYLEVAPE---DTKPEEFDWKRYHPLESINAWLKKLAETHPE-VLLV 202
            :.:.:.::..:.|.|:|.....:|..   :.....|.:..||.|:.|.:|:......|.. |..:
Mouse    99 HGLAYSIMIKDIQVLLDEERDAMAKSRRLERSTNSFSYSSYHTLDEIYSWIDNFVAEHSNLVSKI 163

  Fly   203 ELGVSAQGRPILGVQIAFDNENRTTVFVESGIHAREWIAPATATYIIDQLVNS--KDSAVQALAR 265
            .:|.|.:.|.||.::.:....||..:::::|||:||||..||..:|..::||:  ||..::.:..
Mouse   164 HIGKSFENRSILVLKFSTGGPNRPAIWIDTGIHSREWITHATGIWISQKIVNAYGKDHVLKRILN 228

  Fly   266 SQRWYIFPTVNPDGYQYTFKGDRMWRKNRA----LFGICRGVDLNRNFPFHWNVTGASGDPCRYD 326
            :...:|....||||:.:|...:|:||||::    :|  |.|||||||:...:...|::.:||...
Mouse   229 TMDIFIEIVTNPDGFAFTHSMNRLWRKNKSSQPGIF--CIGVDLNRNWKAGFGGNGSNKNPCSET 291

  Fly   327 YSGPSAASEVETQRMIEFIRHRVESERIRTFISLHSYSQMIMFPYGHSAERVDNYHDLTDIGKLA 391
            |.||:..||.|...:::||   ......:..||:||||||:|:|||||.|.|.|:.:|.::.|.|
Mouse   292 YRGPAPESEPEVAAIVDFI---TGHGNFKAMISIHSYSQMVMYPYGHSLEPVPNHEELFNLAKDA 353

  Fly   392 ANKIKDVSGRIYKSGSIYETIYPSSGGSKDWAHGQLKIPITFSYELRGPADSEDLFILSAKEIEP 456
            ...:..|.|..|..|||..|:|.:||.|.|||:.. .|...||:|||......  |:|.|.:|.|
Mouse   354 VKALNKVHGIQYIFGSISTTLYSASGISVDWAYDS-GIKYAFSFELRDTGQYG--FLLPASQIVP 415

  Fly   457 TAAEAFASIQTIVQEAGKRGY 477
            ||.|.:.::|||::......|
Mouse   416 TAEETWMALQTIMKHTLNHPY 436

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.