DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4408 and Cpa1

DIOPT Version :9

Sequence 1:NP_651141.2 Gene:CG4408 / 42762 FlyBaseID:FBgn0039073 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_058694.2 Gene:Cpa1 / 24269 RGDID:2388 Length:419 Species:Rattus norvegicus


Alignment Length:455 Identity:126/455 - (27%)
Similarity:228/455 - (50%) Gaps:56/455 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 LLLLLVSSVCVIQESKASSFCTKADQCALDEEIK--TAADSVQARYDHTRIYQV-ELASEEHVRL 99
            :|.||:.:||             .::..:..::.  :|||..|       :.:| ||...||::|
  Rat     6 ILSLLLEAVC-------------GNENFVGHQVLRISAADEAQ-------VQKVKELEDLEHLQL 50

  Fly   100 FQALEQASDSCSFMGHARQPGQKLTIMVTGAKVADFDDLVHSYNVTHRVLNYNFQALIDANYLEV 164
                       .|...|.:.|..:.:.|....:......:..:.:::.::..:.|.|:|....::
  Rat    51 -----------DFWRDAARAGIPIDVRVPFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEEKQQM 104

  Fly   165 APEDTK---PEEFDWKRYHPLESINAWLKKLAETHPE-VLLVELGVSAQGRPILGVQIAFDNENR 225
            :....:   .:.|::..||.|:.|..::..|...||: |..:::|.:.:||||..::.:....||
  Rat   105 SAFQARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGTNR 169

  Fly   226 TTVFVESGIHAREWIAPATATYIIDQLVN--SKDSAVQALARSQRWYIFPTVNPDGYQYTFKGDR 288
            ..:::::|||:|||:..|:..:...::..  .:|....|:..:...::....||||:.||.|.:|
  Rat   170 PAIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTNR 234

  Fly   289 MWRKNRA--LFGICRGVDLNRNFPFHWNVTGASGDPCRYDYSGPSAASEVETQRMIEFIRHRVES 351
            ||||.|:  ...:|.|||.|||:...:.:.|||.:||...|.|....||||.:.:::|:   ...
  Rat   235 MWRKTRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFV---TSH 296

  Fly   352 ERIRTFISLHSYSQMIMFPYGHSAERVDNYHDLTDIGKLAANKIKDVSGRIYKSGSIYETIYPSS 416
            ..|:.|||:|||||::::|||:::|...:..:|..:.|.|...:..:.|..:|.|||.:|||.:|
  Rat   297 GNIKAFISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQAS 361

  Fly   417 GGSKDWAHGQLKIPITFSYELRGPADSEDL----FILSAKEIEPTAAEAFASIQTIVQEAGKRGY 477
            |.:.||.:.| .|..:|::|||      |.    |:|.|.:|.|||.|.:.::.||:....|..|
  Rat   362 GSTIDWTYSQ-GIKYSFTFELR------DTGLRGFLLPASQIIPTAEETWLALLTIMDHTVKHPY 419

  Fly   478  477
              Rat   420  419

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG4408NP_651141.2 Propep_M14 88..159 CDD:280416 12/71 (17%)
M14_CP_A-B_like 179..472 CDD:199844 101/301 (34%)
Cpa1NP_058694.2 Propep_M14 32..100 CDD:396700 15/85 (18%)
M14_CPA 117..417 CDD:349442 102/309 (33%)
Substrate binding. /evidence=ECO:0000250|UniProtKB:P00730 179..182 1/2 (50%)