DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4408 and sdc-3

DIOPT Version :9

Sequence 1:NP_651141.2 Gene:CG4408 / 42762 FlyBaseID:FBgn0039073 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_506703.1 Gene:sdc-3 / 180009 WormBaseID:WBGene00004747 Length:2150 Species:Caenorhabditis elegans


Alignment Length:394 Identity:88/394 - (22%)
Similarity:140/394 - (35%) Gaps:115/394 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 FYTDFKLRRIKMLP--KGGTPKTWLLLLLVSSVCVIQESKASSFCTKADQCALDEEIKTAADSVQ 78
            |.:.|:||..|..|  :....:.||                 .|....||...:  |:.||..|:
 Worm   229 FRSQFRLRYYKKSPFKRSNILEKWL-----------------KFKKVRDQGVFN--IRDAAREVK 274

  Fly    79 ARYDHTRIY-----QVELASEEHVRL-FQALEQASDSCSFMGHARQPGQKLTIMVTG-AKVADFD 136
            .......:|     |.|....:..|| .|.||:  |:..         :.:|::... :||.|  
 Worm   275 KLLQRKNVYHMTDPQCEQEFWDVYRLQMQWLEE--DNIE---------ENITMLRENLSKVTD-- 326

  Fly   137 DLVHSYNVTHRVLNYNFQALI--DANYLEVAPEDTKPEEFD-WKRYHPLESINAW---------L 189
               ..:|.:..::....:|.|  |..:...|..:.||...: ::...|||.|...         |
 Worm   327 ---EEFNRSVYIMRPENRASIHDDVTFTTDAEINLKPIVLELFRNNMPLEDIRQVKECIDDMINL 388

  Fly   190 KKLAETHPEVLLVELGVSAQGRPILGVQIAFDNENRTTVFVESGI--HAREWIAPATATYIIDQL 252
            ....|..|:|..:|                       ||...||:  |..::|.|.....|:.||
 Worm   389 TVCQELIPQVATIE-----------------------TVRDYSGVEQHRLKYIRPENELEIMFQL 430

  Fly   253 V-------NSKD----SAVQALARSQRWYIFPTVNPDGYQYTFKGDRMWRKNRALFGICR----- 301
            .       |:.|    |.:.||.|::::.....:.|....||     .|||.:..|...|     
 Worm   431 ATVLVKNENTHDQEITSPMFALLRTEQYLWSIPLRPFLRMYT-----DWRKTKLNFKKFRKFSPE 490

  Fly   302 -----GVDLNRNF-PFHWNVTG-ASGDPCRYDYSGPSAASEVETQRMIEFIRHR--VESERI-RT 356
                 .:||.:.| ..:.:..| |:.|...:||   ..|||::.....||||.|  :|.:|. |.
 Worm   491 LVSKAPIDLFKVFLTTNMDKKGVATKDTDCFDY---RTASEIKKLYHEEFIRVRPIIEHQRFHRC 552

  Fly   357 FISL 360
            :.|:
 Worm   553 YTSV 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4408NP_651141.2 Propep_M14 88..159 CDD:280416 15/74 (20%)
M14_CP_A-B_like 179..472 CDD:199844 53/219 (24%)
sdc-3NP_506703.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165671
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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