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Protein Alignment CG4408 and Cpb2

DIOPT Version :9

Sequence 1:	NP_651141.2	Gene:	CG4408 / 42762	FlyBaseID:	FBgn0039073	Length:	479	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	360	Identity:	116/360 - (32%)
Similarity:	192/360 - (53%)	Gaps:	22/360 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly   121 QKLTIMVTGAKVADFDDLVHSYNVTHRVLNYNFQALIDANYLEVAPEDT---KPEEFDWKRYHPL 182
            :::...|..:.|......:::..:...||..|.:.||.    :....||   :.....:::||.|
  Rat    65 KEVHFFVNASDVNSVKAYLNASRIPFNVLMNNVEDLIQ----QQTSNDTVSPRASSSYYEQYHSL 125

  Fly   183 ESINAWLKKLAETHPEVL-LVELGVSAQGRPILGVQIAFDNENR--TTVFVESGIHAREWIAPAT 244
            ..|.:|::.:.|.||::| .:.:|.|.:..|:..:::: ..|:|  ..::::.||||||||:||.
  Rat   126 NEIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVS-GKEHRVKNAIWIDCGIHAREWISPAF 189

  Fly   245 ATYIIDQLV--NSKDSAVQALARSQRWYIFPTVNPDGYQYTFKGDRMWRKNRALF--GICRGVDL 305
            ..:.|..:.  :.|::....|.|...:||.|.:|.|||.||:|.:|||||||::.  ..|.|.||
  Rat   190 CLWFIGYVTQFHGKENTYTRLLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRSVHMNNRCVGTDL 254

  Fly   306 NRNFPF-HWNVTGASGDPCRYDYSGPSAASEVETQRMIEFIRHRVESERIRTFISLHSYSQMIMF 369
            ||||.. ||...|||...|...|.|....||.|.:.:.:|:|..:  ..|:.:||:|||||.|:|
  Rat   255 NRNFASKHWCEKGASSFSCSETYCGLYPESEPEVKAVADFLRRNI--NHIKAYISMHSYSQQILF 317

  Fly   370 PYGHSAERVDNYHDLTDIGKLAANKIKDVSGRI-YKSGSIYETIYPSSGGSKDWAHGQLKIPITF 433
            ||.::..:..::.:|:.:...|...|:.::... |..||..|::|.:.|||.||.: .|.|..:|
  Rat   318 PYSYNRSKSKDHEELSLVASEAVRAIESINKNTRYTHGSGSESLYLAPGGSDDWIY-DLGIKYSF 381

  Fly   434 SYELRGPADSEDLFILSAKEIEPTAAEAFASIQTI 468
            :.|||......  |:|..:.|:||.|||.|::..|
  Rat   382 TIELRDTGRYG--FLLPERFIKPTCAEALAAVSKI 414

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.