DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS3 and RPS3

DIOPT Version :9

Sequence 1:NP_001287481.1 Gene:RpS3 / 42761 FlyBaseID:FBgn0002622 Length:246 Species:Drosophila melanogaster
Sequence 2:NP_014221.3 Gene:RPS3 / 855543 SGDID:S000005122 Length:240 Species:Saccharomyces cerevisiae


Alignment Length:236 Identity:156/236 - (66%)
Similarity:187/236 - (79%) Gaps:13/236 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIREL 71
            ||||||.|:||:|.||||||.||||||:|||||||||||::||:||.||:||.||||.||||.||
Yeast     5 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINEL 69

  Fly    72 TAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGC 136
            |.:|||||.:..|.|.||||:|..|||.|:|||||:::||..|||:|||.|||:||:||||||||
Yeast    70 TLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGC 134

  Fly   137 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDP-KNKI 200
            |||||||||..|||:|||.||.:||||.|.||:::|||||||:||||||||||:|  .|| |::.
Yeast   135 EVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIM--RDPAKSRT 197

  Fly   201 GPKKPLPDNVSVVEPKEEKIYETP---------ETEYKIPP 232
            || |.|||.|:::|||||:....|         |||.:..|
Yeast   198 GP-KALPDAVTIIEPKEEEPILAPSVKDYRPAEETEAQAEP 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS3NP_001287481.1 PTZ00084 6..222 CDD:240260 151/215 (70%)
RPS3NP_014221.3 PTZ00084 1..216 CDD:240260 151/213 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345350
Domainoid 1 1.000 136 1.000 Domainoid score I1081
eggNOG 1 0.900 - - E1_COG0092
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H779
Inparanoid 1 1.050 300 1.000 Inparanoid score I504
Isobase 1 0.950 - 0.861654 Normalized mean entropy S130
OMA 1 1.010 - - QHG60603
OrthoFinder 1 1.000 - - FOG0001904
OrthoInspector 1 1.000 - - oto100175
orthoMCL 1 0.900 - - OOG6_100514
Panther 1 1.100 - - LDO PTHR11760
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1246
SonicParanoid 1 1.000 - - X2144
TreeFam 1 0.960 - -
1615.740

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