DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS3 and rps3

DIOPT Version :9

Sequence 1:NP_001287481.1 Gene:RpS3 / 42761 FlyBaseID:FBgn0002622 Length:246 Species:Drosophila melanogaster
Sequence 2:NP_989119.1 Gene:rps3 / 394724 XenbaseID:XB-GENE-978298 Length:246 Species:Xenopus tropicalis


Alignment Length:230 Identity:194/230 - (84%)
Similarity:209/230 - (90%) Gaps:0/230 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIREL 71
            ||||||||:||||||||||||||||||||||||||||||:||||||:||:||.||||||||||||
 Frog     5 ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69

  Fly    72 TAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGC 136
            ||:|||||.|..|.:||||||||.||||||||||||||||.||||||||||||||:|||||||||
 Frog    70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGC 134

  Fly   137 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIG 201
            |||||||||||||||||||||||||||||.|.||:||.|||||||||||||||:|||:||..|||
 Frog   135 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIG 199

  Fly   202 PKKPLPDNVSVVEPKEEKIYETPETEYKIPPPSKP 236
            |||||||:||:||||||.:..||.:|.|...|.:|
 Frog   200 PKKPLPDHVSIVEPKEEILPTTPISEQKGAKPDQP 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS3NP_001287481.1 PTZ00084 6..222 CDD:240260 188/214 (88%)
rps3NP_989119.1 PTZ00084 4..216 CDD:240260 186/210 (89%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 155 1.000 Domainoid score I4209
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H779
Inparanoid 1 1.050 373 1.000 Inparanoid score I2060
OMA 1 1.010 - - QHG60603
OrthoDB 1 1.010 - - D1135751at2759
OrthoFinder 1 1.000 - - FOG0001904
OrthoInspector 1 1.000 - - oto105091
Panther 1 1.100 - - LDO PTHR11760
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2144
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.080

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