DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnt and gabpa

DIOPT Version :9

Sequence 1:NP_524461.2 Gene:pnt / 42757 FlyBaseID:FBgn0003118 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001315341.1 Gene:gabpa / 58110 ZFINID:ZDB-GENE-011010-2 Length:455 Species:Danio rerio


Alignment Length:689 Identity:141/689 - (20%)
Similarity:203/689 - (29%) Gaps:375/689 - (54%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 GIGNSGNHSGQVSTMRLKKNRKVTFLSSLVESKNIFIKEEPIHGCKDLCSLSDIS---DH----- 137
            ||......:.::.|..:..|..:..|..|:|.:    .:.|:.| .|:| |.||.   ||     
Zfish    26 GIEEQTITAAELITQDIDINEPIGNLKKLLEPR----LQIPLDG-YDIC-LQDIQLHPDHSLFDQ 84

  Fly   138 --------EASLEVPTALPPLTPGTNRKVN--EVLK----------------------------- 163
                    :.|:::.|     .|| ..|:|  |::|                             
Zfish    85 GVKTDGTVQLSVQIVT-----KPG-EEKLNILEIVKPVETVEVVIDPDAAAGEEAHLVEDGQVIA 143

  Fly   164 ------------------ASFASWEKEVQKCNITKDPREWTEEHVIYWLNWAKNEFSLVSMNLDP 210
                              |:...:.||..:.||..||.:||.:.||:|..|...||.:..|.:..
Zfish   144 VERAALPDETSEQVTRWAAALEGYRKEQVRLNIPYDPVQWTADQVIHWAVWVMKEFGIDEMEVGG 208

  Fly   211 FYKMKGRAMVDLGKEKFLAITPPFTGDILWEHLDILQKDCEKPNEDIVHGNSFESATTASVCGSD 275
            .: :.||.:....:|:||...|  :|:|||.||::|:|                           
Zfish   209 IH-IPGRQLCGFSQEEFLQRVP--SGEILWSHLELLRK--------------------------- 243

  Fly   276 HQVANYPNETHANSNNSSINSRLSMDYVTSAGNSDNKNFHRATPHSHNGYNTSNTHDRINNSTPP 340
                                      ||.::                                  
Zfish   244 --------------------------YVLAS---------------------------------- 248

  Fly   341 QQQQSQQPTVNGSGSASSNNNNSMLPPAVQQSNNENNNTSSSNTNNSSNNNNNSGGSNNSNAGSN 405
             |.|||:.||      :.:....::|..|||:.                                
Zfish   249 -QDQSQEATV------TIDQPVQIIPAPVQQAT-------------------------------- 274

  Fly   406 NNNNNNNNINFMAAAAIFQHHLKEEPGTQNGNIGGYGGGSNSQNDPTDLSSYGLPAHLAAYGGGS 470
                       ..|..:.:|:                                            
Zfish   275 -----------PTAIKVMKHN-------------------------------------------- 284

  Fly   471 GSGPTGGRSSGGGGDESDYHSTISAQDHQSQQSSGGNGSGGASGGSTGNSNGYLDSSSEFYGSYA 535
             ..|...|.||                  .::||.||        .|||                
Zfish   285 -KTPRAPRISG------------------EERSSPGN--------RTGN---------------- 306

  Fly   536 GRNRFHDGYPPEFTPYDAQSFQSMGPQPTAMDQWGAAHAHQHPAAYMSTLGLDKGLLGGYTTQGG 600
                                                                             
Zfish   307 ----------------------------------------------------------------- 306

  Fly   601 VPCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 665
                  :|.|||||||||||.||..:..|||.|:..||||..|:.||::||.|||||.|||||||
Zfish   307 ------NGQIQLWQFLLELLTDKDSRDCISWVGEEGEFKLNQPELVAQKWGQRKNKPTMNYEKLS 365

  Fly   666 RGLRYYYDKNIIHKTAGKRYVYRFVCDLQNLVGHTPEEL 704
            |.||||||.::|.|..|||:||:|||||:.|:|::..||
Zfish   366 RALRYYYDGDMISKVQGKRFVYKFVCDLRTLIGYSAAEL 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pntNP_524461.2 SAM_PNT-ETS-1,2 179..250 CDD:188879 25/70 (36%)
ETS 609..693 CDD:197710 55/83 (66%)
gabpaNP_001315341.1 GABP-alpha 40..118 CDD:288472 21/89 (24%)
SAM_PNT-GABP-alpha 162..248 CDD:176084 32/141 (23%)
ETS 309..394 CDD:197710 56/84 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3806
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D243757at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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