DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnt and Etv1

DIOPT Version :9

Sequence 1:NP_524461.2 Gene:pnt / 42757 FlyBaseID:FBgn0003118 Length:718 Species:Drosophila melanogaster
Sequence 2:XP_006240109.1 Gene:Etv1 / 362733 RGDID:1312007 Length:490 Species:Rattus norvegicus


Alignment Length:103 Identity:61/103 - (59%)
Similarity:75/103 - (72%) Gaps:8/103 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   602 PCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSR 666
            |.:...|.:||||||:.||.|.:...||:|||.|.||||.:|:||||||||:||:|.|||:||||
  Rat   340 PTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSR 404

  Fly   667 GLRYYYDKNIIHKTAGKRYVYRFVCDLQNLVGHTPEEL 704
            .|||||:|.|:.|.||:||||:||||        ||.|
  Rat   405 SLRYYYEKGIMQKVAGERYVYKFVCD--------PEAL 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pntNP_524461.2 SAM_PNT-ETS-1,2 179..250 CDD:188879
ETS 609..693 CDD:197710 55/83 (66%)
Etv1XP_006240109.1 ETS_PEA3_N 28..346 CDD:398352 1/5 (20%)
ETS 347..431 CDD:197710 56/91 (62%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3806
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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