DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pnt and elf-1

DIOPT Version :9

Sequence 1:NP_524461.2 Gene:pnt / 42757 FlyBaseID:FBgn0003118 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001021180.1 Gene:elf-1 / 175226 WormBaseID:WBGene00016029 Length:420 Species:Caenorhabditis elegans


Alignment Length:446 Identity:101/446 - (22%)
Similarity:136/446 - (30%) Gaps:183/446 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 NTSSSNTNNSSNNNNNSGGSNNSNAGSNNNNNNNNNINF---------------------MAAAA 421
            |.||||.::.|:..||    ||.|.....::..:.::..                     ::|.|
 Worm    25 NISSSNISSKSSRINN----NNDNENDEEDDGRDLDVEMKTESEWPRIERPTPKYADGRRISAPA 85

  Fly   422 IFQHHLKEEPGTQNGNIGGYGGGSNSQNDPTDLSSYGLPAHLAAYGGGSGSGPTGGRSSGGGGDE 486
            :..|.|.|.|.:.:..|             |.|...                             
 Worm    86 VLAHGLFEIPTSCSVQI-------------TVLQQL----------------------------- 108

  Fly   487 SDYHSTISAQDHQSQQSSGGNGSGGASGGSTGNSNGYLDSSSEFYGSYAGRNRFHDGYPPEFTP- 550
            .|..||:|.:...|..|..|.                 ||:.|...| :...|.|...||...| 
 Worm   109 LDQSSTLSLEPTNSPDSGVGT-----------------DSTPETSPS-SSTTRRHAFAPPPPRPR 155

  Fly   551 ------------------------YDAQSFQ-------------------------------SMG 560
                                    ..|||..                               |:.
 Worm   156 PPTVPLPTVTQQIPWQTSTIWPWIQQAQSASTADATQRWLQSALLCPTTSASHPNLLTIPQISVQ 220

  Fly   561 PQPTAMDQWGAAHAHQHPAAYMSTLG--------LDKGLLGGY---TTQGGVPCFTGSGP----- 609
            |||||......|........:..|.|        .:..||..|   |::.    |:...|     
 Worm   221 PQPTAPQTLLTAAPFISSTVFTPTCGDLLTTCTPSNPSLLHPYLLDTSRR----FSEPNPAPLAQ 281

  Fly   610 ------------IQLWQFLLELLL-DKTCQSFISWTGDG-WEFKLTDPDEVARRWGIRKNKPKMN 660
                        ..||:|||.||. |:....||.|.... ..|||.|...|:|.||:.||||.||
 Worm   282 RTPGKKQKDGQVTYLWEFLLRLLQDDQYSPKFIKWIDQAKGIFKLVDSKAVSRLWGMHKNKPGMN 346

  Fly   661 YEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQNLVGHTPEELVAKYDLKIEKKD 716
            ||.:.|.|||||.:.|:.|..|:|.|||||        |.|.::.::.|...|..|
 Worm   347 YETMGRALRYYYQRGILQKVDGQRLVYRFV--------HLPSDVASECDSSCESAD 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pntNP_524461.2 SAM_PNT-ETS-1,2 179..250 CDD:188879
ETS 609..693 CDD:197710 43/102 (42%)
elf-1NP_001021180.1 ETS 294..380 CDD:197710 43/93 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 87 1.000 Inparanoid score I3709
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.960

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