DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdc16 and APC6

DIOPT Version :10

Sequence 1:NP_477397.1 Gene:Cdc16 / 42753 FlyBaseID:FBgn0025781 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_565188.1 Gene:APC6 / 844213 AraportID:AT1G78770 Length:543 Species:Arabidopsis thaliana


Alignment Length:654 Identity:203/654 - (31%)
Similarity:308/654 - (47%) Gaps:129/654 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 RQLVKQFIDMRRYSTALFWAEKVAVLGGLEPRDIYYQAQCMYLLGEYHRAAHTIQHHKLEKNSLP 87
            |.:|:..:....||:|:|:|:|||.|.. :|.|||.|||.::|...|.||.|.:...|:....|.
plant    10 RGVVRDCVSKHLYSSAIFFADKVAALTN-DPSDIYMQAQALFLGRHYRRAFHLLNASKIVLRDLR 73

  Fly    88 CFNLLLESLYAAKEFTEAANVIQNVEVEVMTTSLINQPVDASSGCYLESNSVFGGEENHRNELLS 152
            ...|..:.|...||:.:...::.:.:|:  ...::   .||..|..::.:.  .||:...| :.|
plant    74 FRYLAAKCLEELKEWDQCLLMLGDAKVD--DDGIV---YDAKDGNVIDFDK--DGEDREIN-ISS 130

  Fly   153 SIYLMKGKVYEALDNRGMAMDFYVQALHKSIYCFEALEALVQHEMLMAWEEFELMHHLPLAQQSS 217
            :|..::||.|.||.||..|..:|..|:.....|:||||.|::..||.:.||..|:..|    |.|
plant   131 AICFLRGKAYGALQNRSQARQWYKAAIKADPLCYEALECLIESHMLTSEEESSLLSSL----QFS 191

  Fly   218 EADAKFILKLYESRLKKYYELISARNAEEMSPIVNPDILQFIKEFTARVQQSGSSDTQMPKVSAV 282
            ..|. ::...|...:|||                                         .|.|.|
plant   192 PEDG-WLSSFYSCLIKKY-----------------------------------------DKESTV 214

  Fly   283 KVPLTPSQFMSPAQKVLEDLKAPTFSLQTSLSKASSLIDASHRSMFDSSSRRRSRDHDTDTLIPI 347
            ::..          |.||:        :||.|.:.|                        ::|.:
plant   215 ELKF----------KKLEN--------ETSGSVSGS------------------------SMITL 237

  Fly   348 AECLDRVQRSTDLMAAEAEKCFYDCDYKQCLKILNELLKVDPFHNTALTIQIACLVENGDFNRLF 412
            |       .:|||:|.:||.....|:|::|.::...||:.||||.....:.:|..:|.|:.|.|:
plant   238 A-------NNTDLLACKAEYYHQCCEYQKCFELTAALLEKDPFHLKCTLVHLAAAMELGNSNELY 295

  Fly   413 YVAHKLVDRYPDKAISWYAVGCYYDMIGKSDPARRYLSKATALDRLYGPAWLAYGHSFANENEHE 477
            .:|..||..||.||:||:||||||..|.|...||||.||||.:|..:.||.:.||:|||.:.|.:
plant   296 LMACNLVKDYPSKALSWFAVGCYYYCIKKYAEARRYFSKATGIDGSFSPARIGYGNSFAAQEEGD 360

  Fly   478 QAMAAYFKATQLMRGCHLPLLYIGVECGLTKNLELAEKFFLQAMNIAPLDVYVLHELGVIKYEYE 542
            |||:||..|.:|..|||||.||||:|...|.:.:||::||:||..|.|.|..|.:||||:.|..:
plant   361 QAMSAYRTAARLFPGCHLPTLYIGMEYMRTHSYKLADQFFMQAKAICPSDPLVYNELGVVAYHMK 425

  Fly   543 FFDGAATIFQCTVDIVKQRAKSNNEEISSRWEPLFINLGHSLRKVHKYEEALYNFQYALLLKPQS 607
            .:..|...|:.|:..:.       ..::..|||..:||.|:.||:.|..||:..::.||.|..:|
plant   426 EYGKAVRWFEKTLAHIP-------SALTESWEPTVVNLAHAYRKLRKDREAISYYERALTLSTKS 483

  Fly   608 PTTYTSIGFIHALLGNLDPAIEAFHKSLALNRDCIVTSTILKSCIEDLMDDSATIDEICSAALRD 672
            .:||:.:.:.:.|.||...||..:||:|.|..|                |...|  |:.:.||.|
plant   484 LSTYSGLAYTYHLQGNFSAAISYYHKALWLKPD----------------DQFCT--EMLNVALMD 530

  Fly   673 VAKN 676
            ..:|
plant   531 ECQN 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc16NP_477397.1 ANAPC3 31..112 CDD:463743 27/80 (34%)
BepA <373..456 CDD:443813 38/82 (46%)
TPR 423..>640 CDD:440225 92/216 (43%)
TPR repeat 426..454 CDD:276809 18/27 (67%)
TPR repeat 462..488 CDD:276809 13/25 (52%)
TPR repeat 493..523 CDD:276809 16/29 (55%)
TPR repeat 528..552 CDD:276809 7/23 (30%)
TPR repeat 576..602 CDD:276809 9/25 (36%)
TPR repeat 607..637 CDD:276809 11/29 (38%)
APC6NP_565188.1 ANAPC3 19..98 CDD:463743 27/79 (34%)
LapB 300..517 CDD:442196 96/239 (40%)
TPR repeat 309..337 CDD:276809 18/27 (67%)
TPR repeat 345..371 CDD:276809 13/25 (52%)
TPR repeat 381..405 CDD:276809 12/23 (52%)
TPR repeat 411..439 CDD:276809 9/27 (33%)
TPR repeat 445..479 CDD:276809 13/33 (39%)
TPR repeat 484..511 CDD:276809 9/26 (35%)

Return to query results.
Submit another query.