DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc16 and Cdc23

DIOPT Version :9

Sequence 1:NP_477397.1 Gene:Cdc16 / 42753 FlyBaseID:FBgn0025781 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_001260629.1 Gene:Cdc23 / 35315 FlyBaseID:FBgn0032863 Length:678 Species:Drosophila melanogaster


Alignment Length:701 Identity:134/701 - (19%)
Similarity:228/701 - (32%) Gaps:251/701 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LGGLEPRDI--YYQAQCMYLLGEYHRAAHTIQHHKLEKNSLPCFNLLLESLYAAKE------FTE 104
            |.|:.|.:.  |:.|:..|.:.||.||||.:::.   ::|:|.| |...|.|.|:|      .|:
  Fly    65 LEGIAPEEYSDYFLAKSYYDVREYDRAAHAVRNC---ESSVPRF-LHFYSSYMAREKRRLDSTTD 125

  Fly   105 AANVIQNVEVEVMTTSLINQPVDASSGCYLESNSVFGGEENHRNELLSSIYLMKGKVYEALDNRG 169
            .||:.:.           ||..|.:                   :||:::.:..||  ..||..|
  Fly   126 QANLHEP-----------NQMRDLA-------------------DLLATLRMEYGK--SRLDGYG 158

  Fly   170 MAMDFYVQALHKSIYCFEALE-ALVQHEML--MAWEEF-ELMHHLPLAQQSSEADAKFILKLYES 230
            :   :....:.|::...:|.| .|||...|  |.|..: ||.   ||..:..        ||...
  Fly   159 I---YLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELS---PLIMEKK--------KLLSL 209

  Fly   231 RLKKYY--ELISARNAEEMSPIVNPDILQFIKEFTARVQQSGSSDTQMPKVSAVKVPLTPSQFMS 293
            :|..::  ....|....|:  .:|.|.|                                     
  Fly   210 QLGGHWMRHFFMAHTYLEL--YLNDDGL------------------------------------- 235

  Fly   294 PAQKVLEDLKAPTFSLQTSLSKASSLIDASHRSMFDSSSRRRSRDHDTDTLIPIAECLDRVQRST 358
               |:.|||:|..||....|....:|:..:.|                                 
  Fly   236 ---KIYEDLQASGFSKSIYLIAQMALVYHNKR--------------------------------- 264

  Fly   359 DLMAAEAEKCFYDCDYKQCLKILNELLKVDPFHNTALTIQIACLVENGD-FNRLFYV-------- 414
                          |..:.:::...||:.||:.           ::|.| ::.|.:|        
  Fly   265 --------------DVDKAIELYQALLESDPYR-----------LDNVDTYSNLLFVKEMKTEMA 304

  Fly   415 --AHKLVDRYPDKAISWYAVGCYYDMIGKSDPARRYLSKATALDRLYGPAWLAYGHSFANENEHE 477
              |||.|.....:..:...:|.||.:......|..|..:|..|:..|..||...||.|.......
  Fly   305 QLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNPKYLAAWTLMGHEFMELKNTN 369

  Fly   478 QAMAAYFKATQLMRGCHLPLLYIGVECGLTKNLELAEKFFLQAMNIAPLDVYVLHELGVIKYEYE 542
            .|:.:|.||.::.:..:.....:|....:.|....:..:|..|..:.|.|..:|..||   ..||
  Fly   370 AAIQSYRKAVEVNKRDYRAWYGLGQAYEIIKMHYYSLYYFKIAHQLRPYDSRMLVALG---ETYE 431

  Fly   543 FFDGAATIFQC---TVDI--------------------------------VKQRAKSNNEEISSR 572
            ..|......:|   .:|:                                ..:||.::.:.:...
  Fly   432 KLDKCENAVKCYWKAIDVGDIEGIAMYKLANLHEKLGDHETAVHCYIMYCEDERAATDKQSLYQG 496

  Fly   573 WEPLFINLGHSLRKVHKYEEALYNFQYALLLKPQSPTTYTSIGFIHALLGNLDPAIE--AFHKSL 635
                ||.|.:...|..:||.|.|                    :.:..|.:.|..:|  |..|::
  Fly   497 ----FITLANYYEKKGEYERAAY--------------------YAYKCLDSEDRKMEAKALLKTI 537

  Fly   636 ALNRDC-----IVTSTILKSCIEDLMDDSATIDEICSAALRDVAKNITANS 681
            ...|:.     :.|||.:.:.      |:::.||: ...|:||...:...|
  Fly   538 DWKRNAEGQKKVKTSTAVANA------DTSSEDEM-EWELQDVRVRVPITS 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc16NP_477397.1 ANAPC3 31..112 CDD:289650 23/71 (32%)
TPR_11 425..489 CDD:290150 17/63 (27%)
TPR repeat 426..454 CDD:276809 6/27 (22%)
TPR repeat 462..488 CDD:276809 9/25 (36%)
TPR repeat 493..523 CDD:276809 4/29 (14%)
TPR repeat 528..552 CDD:276809 6/23 (26%)
TPR_11 576..638 CDD:290150 13/63 (21%)
TPR repeat 576..602 CDD:276809 8/25 (32%)
TPR repeat 607..637 CDD:276809 5/31 (16%)
Cdc23NP_001260629.1 ANAPC8 11..119 CDD:281973 20/57 (35%)
TPR 235..507 CDD:223533 60/376 (16%)
TPR repeat 255..278 CDD:276809 4/69 (6%)
TPR repeat 318..346 CDD:276809 6/27 (22%)
TPR repeat 351..381 CDD:276809 10/29 (34%)
TPR repeat 386..414 CDD:276809 4/27 (15%)
TPR repeat 420..448 CDD:276809 7/30 (23%)
TPR repeat 454..477 CDD:276809 0/22 (0%)
TPR repeat 494..522 CDD:276809 8/51 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449299
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12558
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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