DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc16 and emb-27

DIOPT Version :9

Sequence 1:NP_477397.1 Gene:Cdc16 / 42753 FlyBaseID:FBgn0025781 Length:718 Species:Drosophila melanogaster
Sequence 2:NP_495712.1 Gene:emb-27 / 174314 WormBaseID:WBGene00001281 Length:655 Species:Caenorhabditis elegans


Alignment Length:554 Identity:129/554 - (23%)
Similarity:244/554 - (44%) Gaps:79/554 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 KVYEALD----NRGMAMDFYVQALHKSIYCFEALEALVQHE------MLMAWEEFELM------H 208
            ||.|.|:    :..:|   |...|:.:|...|..:.:...|      :|..|.....:      |
 Worm    62 KVMEMLEIGRTDEAVA---YADTLYSNIIDDEQQDIVTIAEYVKILVVLRQWRRISHIIARGNYH 123

  Fly   209 HLPLAQQSSEADAKFILKLYESRLKKYYELISARNAEEMSPIVNPDILQFIKEFTARV---QQSG 270
            .:.:......|.|.|..||||...:.....:...|.:     :.|..::.:.:.|.|.   ::..
 Worm   124 QIHIVFAYYAATALFQRKLYEDVAELSVGHLLPSNGQ-----IGPLPVRTLSQVTGRYVEEERMK 183

  Fly   271 SSDTQMPKV--SAVKVPLTPSQFMSPAQKVLE---------------DLKAPTFSLQTSLSKASS 318
            .|...|.::  |:.|:.:.|:..::.|:..|:               .|...|..::..::|.:.
 Worm   184 YSFANMAELDNSSKKLRMVPALMITIAESFLKLMNRDAAMICINYALSLDNTTLHVERLMAKYNL 248

  Fly   319 LIDA---SHRSMFDSSSRRRSRDHDTDTLIPIAECLDRVQRSTDLMAAEAEKCFYDCDYKQCLKI 380
            :..|   .:|.:.:...:....:||...|      ::|.||:.::..           :::..||
 Worm   249 VEPAMWEKYRKVRNEQLKLHEGNHDPRIL------MERAQRAYEMGR-----------FRETKKI 296

  Fly   381 LNELLKVDPFHNTALTIQIACLVENGDFNRLFYVAHKLVDRYPDKAISWYAVGCYYDMIGKSDPA 445
            .:||..:...|...:.::|.||....|...|..:.|:||...|...:.||.|..||..||.:..|
 Worm   297 TDELFDLFGPHPECIILRIHCLTMLKDSRSLLELGHQLVSDDPHIPLPWYCVAMYYYSIGANSRA 361

  Fly   446 RRYLSKATALDRLYGPAWLAYGHSFANENEHEQAMAAYFKATQLMRGCHLPLLYIGVECGLTKNL 510
            |.::||.|.:|..:...|:|:||....|.||||:|:.|::|::|:.....|.||..::.. |.:.
 Worm   362 RNFISKCTMMDSTFAEGWVAFGHILHYEVEHEQSMSCYYRASKLVDKSSEPFLYTSLQYS-THSQ 425

  Fly   511 ELAEKFFLQAMNIAPLDVYVLHELGVIKYEYEFFDGAATIFQCTVDIVKQR------AKSNNEEI 569
            :|::||..:|:..||.|..:.||...:.|..:.:..|..:|:..:.:|.:.      .:...::|
 Worm   426 KLSKKFMGEAVARAPNDPLIRHEEACVAYTAKSYAEADILFRTVLYMVTETDEIIPIEEVLKKKI 490

  Fly   570 SSRWEPLFINLGHSLRKVHKYEEALYNFQYALLLKPQSPTTYTSIGFIHALLGNLDPAIEAFHKS 634
            ...|.|:..|:||..|:..:..||:..:|.|:.::|:......|....:|:|||:|.|.|.|:|:
 Worm   491 DDFWHPMLNNIGHIARRQGRLNEAIMFYQKAIRMEPKFVDAIASTALCYAVLGNIDKATEFFNKA 555

  Fly   635 LALN------RDCIVTSTILKSCIEDLMDDSATI 662
            ||::      |.|:  |.::::..|....|..|:
 Worm   556 LAIDPFNETIRQCL--SKMIQASKESYSVDQQTL 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc16NP_477397.1 ANAPC3 31..112 CDD:289650
TPR_11 425..489 CDD:290150 25/63 (40%)
TPR repeat 426..454 CDD:276809 11/27 (41%)
TPR repeat 462..488 CDD:276809 12/25 (48%)
TPR repeat 493..523 CDD:276809 8/29 (28%)
TPR repeat 528..552 CDD:276809 4/23 (17%)
TPR_11 576..638 CDD:290150 21/61 (34%)
TPR repeat 576..602 CDD:276809 8/25 (32%)
TPR repeat 607..637 CDD:276809 11/29 (38%)
emb-27NP_495712.1 TPR repeat 308..336 CDD:276809 7/27 (26%)
TPR repeat 341..371 CDD:276809 12/29 (41%)
LcrH_SycD 346..443 CDD:274197 35/97 (36%)
TPR repeat 376..402 CDD:276809 11/25 (44%)
TPR_11 442..526 CDD:290150 18/83 (22%)
TPR repeat 447..489 CDD:276809 6/41 (15%)
TPR_11 498..560 CDD:290150 21/61 (34%)
TPR 498..528 CDD:197478 9/29 (31%)
TPR repeat 498..523 CDD:276809 8/24 (33%)
TPR repeat 528..558 CDD:276809 11/29 (38%)
TPR <536..562 CDD:197478 11/25 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159414
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1173
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D269745at33208
OrthoFinder 1 1.000 - - FOG0004793
OrthoInspector 1 1.000 - - oto19738
orthoMCL 1 0.900 - - OOG6_102501
Panther 1 1.100 - - LDO PTHR12558
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R265
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.780

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