Protein Alignment orb and cpeb1a

DIOPT Version :10

• Sequence 1: NP_524460.2
• Gene: orb / 42752
• FlyBaseID: FBgn0004882
• Length: 915
• Species: Drosophila melanogaster
• Sequence 2: NP_571800.1
• Gene: cpeb1a / 79079
• ZFINID: ZDB-GENE-080723-42
• Length: 522
• Species: Danio rerio
• Alignment Length: 526
• Identity: 218/526 - (41%)
• Similarity: 301/526 - (57%)
• Gaps: 82/526 - (15%)

  Fly   328 GSGLGLSLANASTRSN---SPESQNSSNSTTEQNLLDMINLLSVNSNKIPHQQQQQQQQQQQQQQ 389
            |||       :||.|:   :||.|:...:......|. :.|||:   .:|...|:...:.:.|:.
Zfish    42 GSG-------SSTVSSMLLAPEQQDHPAAVPSDEELS-LGLLSL---ALPCWYQELWSRPEAQRD 95

  Fly   390 QQ-----------QQNQQQLQVQQQHQLQQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASS 443
            .|           ..:..|.|..|.|:        :......::..|  :.|...|:|   .:|.
Zfish    96 VQTPLNLLGSSRGDGDWVQHQALQAHE--------SAGGRDSLTPTL--ETHSLLHSG---SSSP 147

  Fly   444 SGNENCFSQYNLENITS--VDMELAKLQNLQRINTLKL-LHAQAQQMPLINQLLQSYAGNAIGSV 505
            ..:||.......|::.|  |...|..|.:..|:..||| ......|.|| |..:.:.:|.|.|||
Zfish   148 VNSENSAVSSGSEHLASLRVSPPLPLLLSGLRVEDLKLGSDVGLDQNPL-NTFMNASSGRAEGSV 211

  Fly   506 -----------GGSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCDATCT 559
                       |...||                     :......::|.||.:|.:||:.:|:.:
Zfish   212 FSRWSTGPVWPGWDTLG---------------------LNKPSFCIEREAKLHKQAAAVNEASYS 255

  Fly   560 WSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKE--QQAAQPKGYVYI 622
            |.|.||||.::...||.||||||:||||:|.||...|..||.:|||||||:  .....|:||||:
Zfish   256 WEGSLPPRHYKTPVYSCKVFLGGVPWDITEASLQSTFSVFGPLKVEWPGKDGKHPRCPPQGYVYL 320

  Fly   623 IFESDKQVKALLSACV---LQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQKL 684
            :|:.:|.||:||.||.   ||.||.   ..:::|:|||||.||||:||||:|:||||:|..||:|
Zfish   321 LFDWEKSVKSLLQACTQHRLQADDY---LQFYYKLSSRRIHSKDVQVIPWVISDSNFIRCPSQRL 382

  Fly   685 DPTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAA 749
            ...||||||||||.|.||||.:|||:||.||:||||||||:|||||||||||.:.|||:|||:||
Zfish   383 CRNKTVFVGALHGMLNAEGLAHIMDELFGGVMYAGIDTDKHKYPIGSGRVTFRSQRSYLKAVTAA 447

  Fly   750 FIEIRTTKFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIVKNHKPL 814
            |::|:|:|||||||:||||:|::|.||..|.||::||..:||:|:|||||.|:||.|::.:|:||
Zfish   448 FVQIKTSKFTKKVQIDPYLDDSICQICSSQPGPFFCRAQACFKYYCRSCWHWRHSLDVLSSHQPL 512

  Fly   815 TRNSKS 820
            .||.||
Zfish   513 MRNQKS 518

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
orb	NP_524460.2	RRM1_CPEB1	574..674	CDD:410122	57/104 (55%)
		RRM2_CPEB1	685..768	CDD:410124	61/82 (74%)
		CEBP_ZZ	762..817	CDD:465105	30/54 (56%)
cpeb1a	NP_571800.1	CEBP1_N	<147..268	CDD:465107	36/142 (25%)
		RRM1_CPEB1	270..372	CDD:410122	57/104 (55%)
		RRM2_CPEB1	384..466	CDD:410124	61/81 (75%)
		CEBP_ZZ	460..515	CDD:465105	30/54 (56%)