DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment orb and Cpeb4

DIOPT Version :9

Sequence 1:NP_001262870.1 Gene:orb / 42752 FlyBaseID:FBgn0004882 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_080528.2 Gene:Cpeb4 / 67579 MGIID:1914829 Length:729 Species:Mus musculus


Alignment Length:776 Identity:205/776 - (26%)
Similarity:316/776 - (40%) Gaps:162/776 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TPSTSAPILGAGGGGRANGVTAGAATATGVGVGAGGTLPGPGVPSIQGGGGGGVVGQQTNASCNT 169
            ||:.:|.|         |..||    |.|...|:....|.|...:||    ..::|.:...|...
Mouse    38 TPNPAAFI---------NNNTA----ANGSSAGSAWLFPAPATHNIQ----DEILGSEKAKSQQQ 85

  Fly   170 SAANPSASFGGNGSSSDVNNLLLASAAAAAAAAAGDGAQLSANAAAYAPLTPSSTHSSASPGTKS 234
            ...:|......:.|......:|..:..|.|....||.:..::|......:        .|| ..:
Mouse    86 EQQDPLEKQQLSPSPGQEAGILPETEKAKAEENPGDSSSENSNGKEKLRI--------ESP-VLT 141

  Fly   235 NFDYFQFENVAQS-NPLKAFQRTNISF-DCSAPLSPSTPTSIYNRS--FHSSPLVSDSSNSSSGI 295
            .|||.:...:..| .||.:...:...| :.||.::||:.|.|...:  ||...:...|:|:.:.:
Mouse   142 GFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASFFHQGGVPGASANNGALL 206

  Fly   296 GLSMDSINMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANASTRSNSPESQNSSNSTTEQNLL 360
                                    :.:..:.:..|.|.|.        ||:              
Mouse   207 ------------------------FQNFPHHVSPGFGGSF--------SPQ-------------- 225

  Fly   361 DMINLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQ--HQLQQQFVNLNR------NY 417
              |..||.:....||.|....|.|||::.....:......:..  :||.....|||:      :|
Mouse   226 --IGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRSAAFNQLPHLANNLNKPPSPWSSY 288

  Fly   418 EQQISANLGSQQHGFEHNGVGVGASSSGNE------------NCFSQYNLENITSVDMELAK--- 467
            :........|...|  ..|.|...:|.|.:            |..|... :|..|..::|.|   
Mouse   289 QSPSPTPSSSWSPG--GGGYGGWGASQGRDHRRGLNGGITPLNSISPLK-KNFASNHIQLQKYAR 350

  Fly   468 -----------------LQNL----QRINTLKLLHAQAQQMPLINQLLQSYAGNAIGSVGGSNLG 511
                             ..|:    :|..|..:...::..:.::.....|..|....|..||:..
Mouse   351 PSSAFAPKSWMEDSLNRADNIFPFPERPRTFDMHSLESSLIDIMRAENDSIKGRLNYSYPGSDSS 415

  Fly   512 NLMSA-------GGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCDATCTWSGHLPPRSH 569
            .|::|       |.|||           ....||.||.........:.|....|    .......
Mouse   416 LLINARTYGRRRGQSSL-----------FPMEDGFLDDGRGDQPLHSGLGSPHC----FTHQNGE 465

  Fly   570 RMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKEQQAA--QPKGYVYIIFESDKQVKA 632
            |:..||.|||:||:|.||.|..:...|:.||.:.|:||.|.:..:  .||||.:::|:.:..|:|
Mouse   466 RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQA 530

  Fly   633 LLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHG 697
            |:.||:     ...|:.|.. :||..||.|.|::.||.::||:||...||.|||.||:|||.:..
Mouse   531 LIDACI-----EEDGKLYLC-VSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPR 589

  Fly   698 KLTAEGLGNIMDDLFDGVLYAGIDTD-KYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTTKFTKK 761
            .|.|..|..|||.|:.||.||||||| :.|||.|:|||.|||.:||:.|:||.|::::..:..|:
Mouse   590 PLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKR 654

  Fly   762 VQVDPY-LEDALC-----SICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIVKNHKPLTR 816
            |:|.|| |:|.||     :.||.:..|::|..::|.:|:|..||...||....:.||||.:
Mouse   655 VEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVK 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orbNP_001262870.1 CEBP1_N <540..570 CDD:292978 4/29 (14%)
RRM1_CPEB1 574..674 CDD:241167 38/101 (38%)
RRM2_CPEB1 685..770 CDD:241169 45/86 (52%)
CEBP_ZZ 762..817 CDD:292976 23/61 (38%)
Cpeb4NP_080528.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..50 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..133 9/54 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..324 26/131 (20%)
RRM1_CPEB2_like 472..563 CDD:241168 36/96 (38%)
RNA-binding. /evidence=ECO:0000250|UniProtKB:Q17RY0 541..543 0/1 (0%)
RRM2_CPEB2_like 580..660 CDD:241170 40/79 (51%)
CEBP_ZZ 655..716 CDD:374504 23/61 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0129
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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