Protein Alignment orb and cpeb1

DIOPT Version :10

• Sequence 1: NP_524460.2
• Gene: orb / 42752
• FlyBaseID: FBgn0004882
• Length: 915
• Species: Drosophila melanogaster
• Sequence 2: NP_001017330.1
• Gene: cpeb1 / 550084
• XenbaseID: XB-GENE-946167
• Length: 568
• Species: Xenopus tropicalis
• Alignment Length: 289
• Identity: 175/289 - (60%)
• Similarity: 231/289 - (79%)
• Gaps: 7/289 - (2%)

  Fly   540 LDRVAKFYKSSAALCDATCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKV 604
            ::|.|:.::.:||:.:|||||||.||||:::...||.||||||:||||:|..||..|:.||::.|
 Frog   277 IEREARLHRQAAAVNEATCTWSGQLPPRNYKNPVYSCKVFLGGVPWDITETGLINTFRVFGALSV 341

  Fly   605 EWPGKE-------QQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSK 662
            |||||:       .:...||||||::|||:|.|:|||.||...:........::||:||||::.|
 Frog   342 EWPGKDGKHPRCPPKGNMPKGYVYLVFESEKSVRALLQACTQDLLSQDGLSEHYFKMSSRRMRCK 406

  Fly   663 DVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTDKYKY 727
            :|:||||::||||||||.||:|||:||||||||||.|.||.|.:||:|||.||:||||||||:||
 Frog   407 EVQVIPWVLADSNFVRSPSQRLDPSKTVFVGALHGMLNAEALASIMNDLFGGVVYAGIDTDKHKY 471

  Fly   728 PIGSGRVTFSNFRSYMKAVSAAFIEIRTTKFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFR 792
            |||||||||:|.|||:|||||||:||:|.|||||||:||||||::|.:|..|.||::||:..||:
 Frog   472 PIGSGRVTFNNQRSYLKAVSAAFVEIKTAKFTKKVQIDPYLEDSVCQVCNAQPGPFFCRDQVCFK 536

  Fly   793 YFCRSCWQWQHSCDIVKNHKPLTRNSKSQ 821
            |||||||.||||.:|:::|:||.||.||:
 Frog   537 YFCRSCWHWQHSMEILRHHRPLMRNQKSR 565

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
orb	NP_524460.2	RRM1_CPEB1	574..674	CDD:410122	53/106 (50%)
		RRM2_CPEB1	685..768	CDD:410124	65/82 (79%)
		CEBP_ZZ	762..817	CDD:465105	32/54 (59%)
cpeb1	NP_001017330.1	CEBP1_N	1..309	CDD:465107	15/31 (48%)
		RRM1_CPEB1	311..418	CDD:410122	53/106 (50%)
		RRM2_CPEB1	429..512	CDD:410124	65/82 (79%)
		CEBP_ZZ	506..561	CDD:465105	32/54 (59%)