DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment orb and cpeb3

DIOPT Version :9

Sequence 1:NP_001262870.1 Gene:orb / 42752 FlyBaseID:FBgn0004882 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_001015925.1 Gene:cpeb3 / 548679 XenbaseID:XB-GENE-5716009 Length:632 Species:Xenopus tropicalis


Alignment Length:660 Identity:183/660 - (27%)
Similarity:277/660 - (41%) Gaps:173/660 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 PLTPSSTHSSASP----GTKSNFDYFQFENVAQSNPLKAFQ------RTNISFDCS--------- 263
            |.|||.:.|..|.    |:.|..|...|..:...|....||      ..|..|..:         
 Frog    71 PTTPSLSPSFGSTWSTGGSNSAVDDSFFPGITPVNGTMLFQNFPHHHHVNPVFGGTFSPQMGLAH 135

  Fly   264 --------APLSPSTPTSIYNRSFHS-SPLV----SDSSNSSSGIGLSMDSINMFYNQQQQ---- 311
                    :|.||:..|:...|:.:| .|::    |.|.||||      .|.:.:.|||..    
 Frog   136 QTQQQQRRSPASPNNHTAYTQRNAYSHQPILTNKPSSSPNSSS------PSPSNWNNQQNAAWNT 194

  Fly   312 ------QQQPEQQGYTSLGNSMGSGLG-------LSLANASTRSN--SPESQNSSNSTTEQNLLD 361
                  ..||.:....::|..:|.|:|       :|....:..||  :|...:.::..|.::.::
 Frog   195 PSNPWGAMQPGRDPRRAVGVGVGVGVGVPSPLNPISPLKKTFSSNVIAPPKFSRASPLTPKSWVE 259

  Fly   362 MINLLSVNSNK-IPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQLQQQFVNLNRNYEQQISANL 425
            .....:.|.|. :|.|.:.:....                ...|.|:...:::.|...:.:.|.:
 Frog   260 DNAFRTDNGNTLLPLQDRNRPYDS----------------FNLHTLENSLMDMIRTDHEPLKARM 308

  Fly   426 GSQQHGFEHNGVGVGASSSGNENCFSQYNLENITSVDMELAKLQNLQRINTLKLLHAQAQQMPLI 490
            |.   .|.|.|.                               .|:..:||              
 Frog   309 GL---NFHHPGT-------------------------------DNIMALNT-------------- 325

  Fly   491 NQLLQSYAGNAIGSVGGSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCD 555
                :||.               ...|.|||.....|.:|      |||.|:......||...|.
 Frog   326 ----RSYG---------------RRRGRSSLFPFEDGFLG------DGHGDQSLSSGLSSPTHCQ 365

  Fly   556 ATCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKEQQAA--QPKG 618
                       ...|:..||.|||:||:|.||.|..:...|:.||.:.|:||.|.:..:  .|||
 Frog   366 -----------NGERIERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKG 419

  Fly   619 YVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQK 683
            |.:::|:.:..|:||:.|| |:.|    |:.|.. :||..||.|.|::.||.::||:||...||.
 Frog   420 YAFLLFQEESSVQALIDAC-LEED----GKLYLC-VSSPTIKDKPVQIRPWNLSDSDFVMDGSQP 478

  Fly   684 LDPTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTD-KYKYPIGSGRVTFSNFRSYMKAVS 747
            |||.||:|||.:...|.|..|..|||.|:.||.||||||| :.|||.|:|||.|||.:||:.|:|
 Frog   479 LDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 543

  Fly   748 AAFIEIRTTKFTKKVQVDPY-LEDALC-----SICGVQHGPYYCRELSCFRYFCRSCWQWQHSCD 806
            |.|::::.....|:|:|.|| |:|.:|     :.||.:..|::|..::|.:|:|..||...||..
 Frog   544 ARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRA 608

  Fly   807 IVKNHKPLTR 816
            ..:.||||.:
 Frog   609 GREFHKPLVK 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orbNP_001262870.1 CEBP1_N <540..570 CDD:292978 4/29 (14%)
RRM1_CPEB1 574..674 CDD:241167 40/101 (40%)
RRM2_CPEB1 685..770 CDD:241169 45/86 (52%)
CEBP_ZZ 762..817 CDD:292976 22/61 (36%)
cpeb3NP_001015925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..89 6/17 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..212 19/90 (21%)
RRM <371..537 CDD:223796 80/171 (47%)
RRM1_CPEB2_like 375..466 CDD:241168 38/96 (40%)
RRM2_CPEB2_like 483..563 CDD:241170 40/79 (51%)
CEBP_ZZ 558..619 CDD:292976 22/61 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.