Protein Alignment orb and orb2

DIOPT Version :9

• Sequence 1: NP_001262870.1
• Gene: orb / 42752
• FlyBaseID: FBgn0004882
• Length: 915
• Species: Drosophila melanogaster
• Sequence 2: NP_001356977.1
• Gene: orb2 / 39018
• FlyBaseID: FBgn0264307
• Length: 769
• Species: Drosophila melanogaster
• Alignment Length: 846
• Identity: 233/846 - (27%)
• Similarity: 352/846 - (41%)
• Gaps: 231/846 - (27%)

  Fly   187 VNNLLLASAAAAAAAAAGDGAQLSANAAAYAPLTPSSTHSSASPGTKSNFDYFQFENVAQSNPLK 251
            :::|.|..|.:|.::|:|..:.||.:.:|.|....|.|.|..:.|
  Fly     1 MDSLKLPKANSATSSASGSNSNLSGSTSASASAATSPTSSGTAVG-------------------- 45

  Fly   252 AFQRTNISFDCSAPLSP-----STPTSI-YN----------RSFHSSPLVSDSSNSSSGIGLSMD 300
                   .....||.||     |||.|: :|          :|||.|.  ...|..:||.|.:..
  Fly    46 -------GILSGAPKSPPGLGSSTPISVRFNANEESLDDILQSFHHSK--HSPSGGASGGGDASP 101

  Fly   301 SINMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANASTRSNSP-ESQNSSNSTT-----EQNL 359
            :.|:                  || ...:||||.:.|..:.|:|| :.|..:.|.:     |.:|
  Fly   102 TSNL------------------LG-MKNNGLGLVVGNCDSLSSSPSQPQMHAGSASLFGNDEVSL 147

  Fly   360 LDMI-------------NLLSVNSNKIP------HQQQQQQQQQQQQQQQQQQNQQQLQ-----V 400
            .:..             .|.::|.||.|      ||||.||.||.|||||..|:||||.     :
  Fly   148 RNNFMQAGGFFNRKSCGGLPNLNLNKPPQLHQQQHQQQHQQHQQHQQQQQLHQHQQQLSPNLSAL 212

  Fly   401 QQQHQLQQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQYNLENITSVDMEL 465
            ...||.|||   |..:......::.|....|..:||...|.||.|            |:.:..::
  Fly   213 HHHHQQQQQ---LRESGGSHSPSSPGGGGGGSPYNGSQAGCSSGG------------ISPIPPQM 262

  Fly   466 AKLQNLQRINTLKL-----------LHAQAQQMPLIN-QLLQSYAGNAIGSVG------------ 506
            ......:|..:..:           :|........:| ..|....|...||.|
  Fly   263 GVSPKYRRSISFPIKGNSPTAIYGNMHMDGMGSGHMNIPTLSIGNGGGGGSTGMVSAGATGGGDA 327

  Fly   507 ---GSNLGNLMSAGG---------SSLMTEM-----AGNVGGIITTNDGH------LDRV----- 543
               |::.||:|::.|         :||...|     .||.||     ||.      .||:
  Fly   328 PYLGNSYGNMMTSNGQMHHGGGLDNSLCDYMRNMSLGGNGGG-----DGSNSMSLMQDRMRVMGG 387

  Fly   544 AKFYKSSAALCDATCTWSGH----------------LPPRS-HRML-------------NYSPKV 578
            .|....:.|:..|.   ||:                |.|.| |..:             .:|.||
  Fly   388 PKHLSEADAMAIAA---SGNDPSVYLNALKMGSPSRLSPHSPHSPIQGGNGGNVGDGTARFSRKV 449

  Fly   579 FLGGIPWDISEQSLIQIFKPFGSIKVEWPGKEQQAA--QPKGYVYIIFESDKQVKALLSACVLQV 641
            |:||:|.||.|..:...|:.||.:.|:||.|.:..:  .||||.:::|:.:..|:.|:.:|:...
  Fly   450 FVGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDSCITDE 514

  Fly   642 DDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGN 706
            |      ..:..:||..||.|.|::.||.:||:::|..::..|||.||||||.:...|.|..|..
  Fly   515 D------KLYLCVSSPTIKDKAVQIRPWRLADADYVLDATMSLDPRKTVFVGGVPRPLKAFELAM 573

  Fly   707 IMDDLFDGVLYAGIDTD-KYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTTKFTKKVQVDPY-LE 769
            |||.|:.||.||||||| :.|||.|:|||.|||.:||:.|:||.|::::.....|:|:|.|| |:
  Fly   574 IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLD 638

  Fly   770 DALC-----SICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIVKNHKPLTRNSKSQSLVGIGPS 829
            |.:|     ..||.:..|::|..::|.:|:|..||...||....:.||||.:....:..
  Fly   639 DQMCDECEGQRCGGKFAPFFCANVTCLQYYCEHCWAVIHSRPGREYHKPLVKEGADRPR------ 697

  Fly   830 SSNVSLPFSGQRSIRDNRMGNGQHQQHQQHQYQQQKHRQLQ-EYSQPHSL-NVMGNSGAANAAAT 892
                ::||   |.....|.....|.:.:|.  ::|:||.|. ..:.|..: ...|:.|.|..|..
  Fly   698 ----AVPF---RWCXRRRWXAALHDERRQQ--REQRHRLLNAALAVPRIITESSGSGGVAEGAGV 753

  Fly   893 S 893
            :
  Fly   754 A 754

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
orb	NP_001262870.1	CEBP1_N	<540..570	CDD:292978	10/51 (20%)
		RRM1_CPEB1	574..674	CDD:241167	35/101 (35%)
		RRM2_CPEB1	685..770	CDD:241169	46/86 (53%)
		CEBP_ZZ	762..817	CDD:292976	22/60 (37%)
orb2	NP_001356977.1	RRM1_CPEB2_like	447..538	CDD:241168	33/96 (34%)
		RRM2_CPEB2_like	555..635	CDD:241170	41/79 (52%)
		CEBP_ZZ	630..691	CDD:318563	22/60 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45437685
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0129
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR12566
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.840