DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment orb and Cpeb3

DIOPT Version :9

Sequence 1:NP_001262870.1 Gene:orb / 42752 FlyBaseID:FBgn0004882 Length:915 Species:Drosophila melanogaster
Sequence 2:XP_017445833.1 Gene:Cpeb3 / 309510 RGDID:1564670 Length:779 Species:Rattus norvegicus


Alignment Length:859 Identity:216/859 - (25%)
Similarity:325/859 - (37%) Gaps:226/859 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QKHSISSYLDHHHQQQQQQQHHLQLQQHQQQHSLLERCNDDGLISFINDPITLNDLLGLCGASTA 96
            |..|.........|||||||...|.||.|||...|:           .:|          ||:.|
  Rat    59 QPQSQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQLQ-----------PEP----------GAAEA 102

  Fly    97 NEVVGTGQTP----STSAPILGAGGGGRA-NGVTAGAATATGVGVGAGGTLPG------------ 144
            .....:.:||    |::.|.|.......| ||.......:.        .|||            
  Rat   103 PSTPLSSETPKPEDSSAVPALSPASAPPAPNGPDKMQMESP--------LLPGLSFHQPPQQPPP 159

  Fly   145 PGVPSIQGGGGGGVVGQQTNASCNTSAANPSASFGGNGSSSDVNNLLLASAAAAAAAAAG----D 205
            |..|:..|                   |:.|.|||...|:...|       |...:...|    :
  Rat   160 PQEPAAPG-------------------ASLSPSFGSTWSTGTTN-------AVEDSFFQGITPVN 198

  Fly   206 GAQLSAN---------AAAYAP---LTPSSTHSSASPGTKSNFDYFQFENVAQSNPLKAFQRTNI 258
            |..|..|         ...::|   |..:..|....|.....   .|.....|:.|.:  ||.:.
  Rat   199 GTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPQP---PQPAQPPQAQPSQ--QRRSP 258

  Fly   259 SFDCSAPLSPSTPTSIYNRSFHSSPLVSDSSNSSSGIGLSMDSINMFYNQQQQQQ---------- 313
            :....||.:..:..:..::...:|...|.|:.:::....:..|.:..:|..|...          
  Rat   259 ASPSQAPYAQRSAAAYGHQPIMTSKPSSSSAAAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPW 323

  Fly   314 ---QPEQQGYTSLGNSMGSGLGL-SLANASTRSNSPESQN-------------SSNSTTEQNLLD 361
               |..:....::|..:|.|:|: |..|..:....|.|.|             :|.|..|.|...
  Rat   324 GGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKSWMEDNAFR 388

  Fly   362 MINLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQLQQQFVNLNRNYEQQISANLG 426
            ..|    .:|.:|.|.:                .:.......|.|:...:::.|...:.:.    
  Rat   389 TDN----GNNLLPFQDR----------------SRPYDTFNLHSLENSLMDMIRTDHEPLK---- 429

  Fly   427 SQQHGFEHNGVGVGASSSGNENCFSQYNLEN----ITSVDMELAKLQNLQRINTLKLLHAQAQQM 487
                       |.....||....|:.....|    ...::.......|:..:||           
  Rat   430 -----------GKHYPPSGPPMSFADIMWRNHFAGRMGINFHHPGTDNIMALNT----------- 472

  Fly   488 PLINQLLQSYAGNAIGSVGGSNLGNLMSAGGSSLMT-EMAGNVGGIITTNDGHLDRVAKFYKSSA 551
                   :||.               ...|.|||.. |.|       ..:|.|.|:......||.
  Rat   473 -------RSYG---------------RRRGRSSLFPFEDA-------FLDDSHGDQALSSGLSSP 508

  Fly   552 ALCDATCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKEQQAA-- 614
            ..|.           ...|:..||.|||:||:|.||.|..:...|:.||.:.|:||.|.:..:  
  Rat   509 TRCQ-----------NGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYF 562

  Fly   615 QPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRS 679
            .||||.:::|:.:..|:||:.|| |:.|    |:.|.. :||..||.|.|::.||.::||:||..
  Rat   563 PPKGYAFLLFQEESSVQALIDAC-LEED----GKLYLC-VSSPTIKDKPVQIRPWNLSDSDFVMD 621

  Fly   680 SSQKLDPTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTD-KYKYPIGSGRVTFSNFRSYM 743
            .||.|||.||:|||.:...|.|..|..|||.|:.||.||||||| :.|||.|:|||.|||.:||:
  Rat   622 GSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYI 686

  Fly   744 KAVSAAFIEIRTTKFTKKVQVDPY-LEDALC-----SICGVQHGPYYCRELSCFRYFCRSCWQWQ 802
            .|:||.|::::.....|:|:|.|| |:|.:|     :.||.:..|::|..::|.:|:|..||...
  Rat   687 AAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASI 751

  Fly   803 HSCDIVKNHKPLTR 816
            ||....:.||||.:
  Rat   752 HSRAGREFHKPLVK 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orbNP_001262870.1 CEBP1_N <540..570 CDD:292978 4/29 (14%)
RRM1_CPEB1 574..674 CDD:241167 40/101 (40%)
RRM2_CPEB1 685..770 CDD:241169 45/86 (52%)
CEBP_ZZ 762..817 CDD:292976 22/61 (36%)
Cpeb3XP_017445833.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0129
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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