DRSC/TRiP Functional Genomics Resources

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Protein Alignment orb and cpeb1b

DIOPT Version :10

Sequence 1:NP_524460.2 Gene:orb / 42752 FlyBaseID:FBgn0004882 Length:915 Species:Drosophila melanogaster
Sequence 2:XP_068078258.2 Gene:cpeb1b / 30702 ZFINID:ZDB-GENE-990927-1 Length:566 Species:Danio rerio


Alignment Length:458 Identity:197/458 - (43%)
Similarity:273/458 - (59%) Gaps:71/458 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   418 EQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQYNLENITSVDMELAKLQNLQRINTLKLLHA 482
            :..:..|..|.|        |:..:.|...|..|.|:..:|.:.|. |.|...:.|:|:...|.:
Zfish   123 DPSVKTNTASLQ--------GILGTPSQLTNKLSNYSDSSIGATDF-LEKFPGMARLNSQSFLDS 178

  Fly   483 QAQQMPLINQLLQSYAGNAIGSVGGSNLGNLMSAGGSS-----LMTEM----------------- 525
            .:     |:.:....:|.:.||   .:|.:|:|:...|     ||:.|                 
Zfish   179 HS-----ISPVDSETSGFSSGS---DHLSDLLSSLRISPSVPFLMSSMQRDPLKLALDSRMDHSS 235

  Fly   526 -----------AGNVG------------GIITTNDG--HLDRVAKFYKSSAALCDATCTWSGHLP 565
                       :|::.            .::.|.:.  .::|.|..::.:|::.:||.||||.||
Zfish   236 SPLTPPPSASPSGSLSHRWPGASIWPSWDLMKTPESPFSIEREAWLHRQAASINEATFTWSGQLP 300

  Fly   566 PRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKE-------QQAAQPKGYVYII 623
            ||.::...||.||||||:||||:|..||..||.:|.:.||||||:       .:...||||||::
Zfish   301 PRHYQNPVYSCKVFLGGVPWDITEAGLINTFKCYGPLSVEWPGKDGKHPRCPPKGNMPKGYVYLV 365

  Fly   624 FESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQKLDPTK 688
            |||||.|:|||..|...:........|:||:||||::.||.:||||:|:|||:|...||:|||..
Zfish   366 FESDKSVRALLQDCTEDLLHPEGYSEYYFKMSSRRMRCKDAQVIPWVISDSNYVSCPSQRLDPRN 430

  Fly   689 TVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAAFIEI 753
            |||||||||.|.||.|.:||:|||.||:||||||||:|||||||||||:|.|||:|||||||:||
Zfish   431 TVFVGALHGMLNAEALASIMNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEI 495

  Fly   754 RTTKFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIVKNHKPLTRNS 818
            :|.|||||||:|||||||:|..|..:.||::||:.:||:|:|||||..|||.||:.||:||.||.
Zfish   496 KTPKFTKKVQIDPYLEDAICQSCSREPGPFFCRDKTCFKYYCRSCWHRQHSMDILSNHRPLMRNQ 560

  Fly   819 KSQ 821
            |.:
Zfish   561 KKR 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orbNP_524460.2 RRM1_CPEB1 574..674 CDD:410122 54/106 (51%)
RRM2_CPEB1 685..768 CDD:410124 64/82 (78%)
CEBP_ZZ 762..817 CDD:465105 32/54 (59%)
cpeb1bXP_068078258.2 None

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