DRSC/TRiP Functional Genomics Resources

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Protein Alignment orb and CG43783

DIOPT Version :9

Sequence 1:NP_001262870.1 Gene:orb / 42752 FlyBaseID:FBgn0004882 Length:915 Species:Drosophila melanogaster
Sequence 2:NP_001261606.1 Gene:CG43783 / 14462845 FlyBaseID:FBgn0264305 Length:1248 Species:Drosophila melanogaster


Alignment Length:648 Identity:122/648 - (18%)
Similarity:203/648 - (31%) Gaps:256/648 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 VNNLLLASAAAAAAAAAGDGAQLSANAAAYAPLTPSSTHSSASPGTKSNFDYFQFENVAQSNPLK 251
            :::|.|..|.:|.::|:|..:.||.:.:|.|....|.|.|..:.|                    
  Fly     1 MDSLKLPKANSATSSASGSNSNLSGSTSASASAATSPTSSGTAVG-------------------- 45

  Fly   252 AFQRTNISFDCSAPLSP-----STPTSI-YN----------RSFHSSPLVSDSSNSSSGIGLSMD 300
                   .....||.||     |||.|: :|          :|||.|.  ...|..:||.|.:..
  Fly    46 -------GILSGAPKSPPGLGSSTPISVRFNANEESLDDILQSFHHSK--HSPSGGASGGGDASP 101

  Fly   301 SINMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANASTRSNSPESQNSSNSTTEQNLLDMINL 365
            :.|:                  || ...:||||.:.|..:.|:||                    
  Fly   102 TSNL------------------LG-MKNNGLGLVVGNCDSLSSSP-------------------- 127

  Fly   366 LSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQLQQQFVNLNRNYEQQISANLGSQQH 430
                                 .|.|.......|....:..|:..|:.....:.::.|.::     
  Fly   128 ---------------------SQPQMHAGSASLFGNDEVSLRNNFMQAGGFFNRKRSGSI----- 166

  Fly   431 GFEHNGVGVGASSSGNENCFSQYNLENITSVDMELAKLQNLQRINTLKLLHAQAQQMPLINQLLQ 495
                  .||..:|||             .|:            |:||....|             
  Fly   167 ------EGVSPTSSG-------------PSI------------ISTLSTASA------------- 187

  Fly   496 SYAGNAIGSVGGSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSS-----AAL-- 553
              ||.     |||::|..::||.|:       :.||......|.:.:..:..|||     ||:  
  Fly   188 --AGG-----GGSSVGGAVAAGDSN-------SSGGTWRLIKGKVTQTIEEIKSSKLPPTAAIPI 238

  Fly   554 --CDATCT-WSGHLPPRSHRMLNYSPKVFLGGIPWDIS---------EQSLIQ---IFKPFGSI- 602
              .|...| ||.. |......|..:..: ...:|.|:.         |..|:|   |....|.: 
  Fly   239 IVADPPSTGWSND-PDSDTECLTVNTSI-SEELPLDLEHKQNSDSDVEAELLQHDSISLGSGDVP 301

  Fly   603 KVEWPGKEQQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCG--------RNYFFK------ 653
            .|...|..:::...:|..:|  .|..:.|...:..:.:.|.|..|        |..|.:      
  Fly   302 TVAATGHSERSRLRRGLAHI--RSKVKAKQQAAPAMNKKDVSPSGSTVPATSVRTGFLRRRNVVE 364

  Fly   654 --------------ISSRRIKS-------KDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHG 697
                          |:|.::|.       ||||:...:....:.:.|::..:|.:|         
  Fly   365 AGSEPSTSQQAEIAIASGKVKKRGILLARKDVEIESGVEVLEDMIPSTAVHIDHSK--------- 420

  Fly   698 KLTAEGLGNIMDDLFDGVLYAGIDTD---KYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTTK 757
                    ::.:...:.|..||.|.|   ....|:..|..|.::  ||::..|.    :|.|:
  Fly   421 --------DVANKRAEEVTDAGADADSRASLTLPVAPGFSTLAS--SYVEKESG----VRDTR 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orbNP_001262870.1 CEBP1_N <540..570 CDD:292978 10/39 (26%)
RRM1_CPEB1 574..674 CDD:241167 25/147 (17%)
RRM2_CPEB1 685..770 CDD:241169 15/76 (20%)
CEBP_ZZ 762..817 CDD:292976
CG43783NP_001261606.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0129
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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