DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment orb and cpeb2

DIOPT Version :9

Sequence 1:NP_001262870.1 Gene:orb / 42752 FlyBaseID:FBgn0004882 Length:915 Species:Drosophila melanogaster
Sequence 2:XP_002666445.2 Gene:cpeb2 / 100330483 ZFINID:ZDB-GENE-130530-639 Length:728 Species:Danio rerio


Alignment Length:788 Identity:216/788 - (27%)
Similarity:318/788 - (40%) Gaps:211/788 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 GQQTNASCNTSAANPSASFGGNG-----SSSDVNNLLLASAAAAAAAAAGDGAQLSANAAAYAPL 219
            |....|:.||:..:..|.|||:.     |:|.|.                     .:::...:||
Zfish     7 GLLQTANTNTAIISGPALFGGDAYTPYRSASPVR---------------------PSSSPRVSPL 50

  Fly   220 TPSSTHS--------SASPGTKSNFDYFQFENVAQ-SNPLKAFQRTNISFDCSAPLSPSTPTSIY 275
            .||...:        :||..:......|.....|| :..|:..:..:...|...|.|.|      
Zfish    51 FPSHQRNMQDEPAGLTASQSSSEQSSRFSAAGHAQTAGDLQHDRNIHQQADPQPPYSSS------ 109

  Fly   276 NRSFHSSPLVSDSSNSSSGIGLSMDSINMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANA-- 338
                      |.||:|||..||..|:.:...|.|.:..........:..|:|.:|....:.||  
Zfish   110 ----------SSSSSSSSSTGLDTDAPSSKVNIQMESPSAHHINNGTGANNMLAGAFPEMQNAGG 164

  Fly   339 -------------------STRSNSPESQNSSN------STTEQN-----LLDMIN---LLSVNS 370
                               .|.|..|...||:|      :|||.:     :...||   ..|.::
Zfish   165 GGGGSASPTLPAFGTPWSVQTSSPPPPVSNSANAINPIPATTEPDTYYPGIPSSINPGFFQSFSA 229

  Fly   371 NKIPHQQ-----QQQQQQQQQQQQQQQQNQQQLQVQQQHQLQQQFVNLNRNY----------EQQ 420
            |..|.|.     ..|.....|.|.::.....|:..|||....|...|.|.:.          .|.
Zfish   230 NPCPVQGFSSPFSPQINVPPQPQSRRSPVSPQIPPQQQGAFLQHRNNYNHHQPMMKQSPWGSHQG 294

  Fly   421 ISANLGSQQHGFEH---NGVGVGAS-----------------------SSGN--------ENCFS 451
            ...|.|....|.:|   .|:||..|                       |:|:        ||.|.
Zfish   295 SGWNSGGMSWGRDHRRGGGMGVPGSINQISPMKKPFSSNVIAPPKFPRSAGSLGPKSWIEENMFR 359

  Fly   452 QYNLENITSVDMELAKLQNLQRINTLKLLHA---------QAQQMPLINQLLQSYAGNAIGSVGG 507
            ..|..|      .|..||:..|:.....:|:         :|:|.|     |:.:.|.......|
Zfish   360 TDNNSN------TLLPLQDRSRMYDSLNMHSLESSLIDIMRAEQDP-----LKGHVGCPHPGADG 413

  Fly   508 SNLGNLMSAG---GSS--------LMTEMAGNVG--GIITTNDGHLDRVAKFYKSSAALCDATCT 559
            ..:.|..|.|   |.|        |:.:..||.|  |::                          
Zfish   414 LLMLNARSYGRRRGRSSLFPIDDGLLDDGHGNQGVPGVL-------------------------- 452

  Fly   560 WSGHLPPRSH--RMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKEQQAA--QPKGYV 620
            .|.|..|..:  |:..:|.|||:||:|.||.|..:...|:.||.:.|:||.|.:..:  .||||.
Zfish   453 GSPHCYPHQNGERIERFSRKVFVGGLPPDIDEDEITSSFRRFGHLVVDWPHKAESKSYFPPKGYA 517

  Fly   621 YIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQKLD 685
            :::|:.:..|:||:.|| |:.|    |:.|.. :||..||.|.|::.||.::||:||...||.||
Zfish   518 FLLFQEETSVQALIEAC-LEED----GKLYLC-VSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLD 576

  Fly   686 PTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTD-KYKYPIGSGRVTFSNFRSYMKAVSAA 749
            |.||:|||.:...|.|..|..|||.|:.||.||||||| :.|||.|:|||.|||.:||:.|:||.
Zfish   577 PRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISAR 641

  Fly   750 FIEIRTTKFTKKVQVDPY-LEDALC-----SICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIV 808
            |::::.....|:|:|.|| |:|.||     :.||.:..|::|..::|.:|:|..||...||....
Zfish   642 FVQLQHGDIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGR 706

  Fly   809 KNHKPLTR 816
            :.||||.:
Zfish   707 EFHKPLVK 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
orbNP_001262870.1 CEBP1_N <540..570 CDD:292978 3/31 (10%)
RRM1_CPEB1 574..674 CDD:241167 39/101 (39%)
RRM2_CPEB1 685..770 CDD:241169 45/86 (52%)
CEBP_ZZ 762..817 CDD:292976 23/61 (38%)
cpeb2XP_002666445.2 RRM <467..633 CDD:223796 79/171 (46%)
RRM1_CPEB2_like 471..562 CDD:241168 38/96 (40%)
RRM2_CPEB2_like 579..659 CDD:241170 40/79 (51%)
CEBP_ZZ 654..715 CDD:292976 23/61 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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