Protein Alignment orb and cpeb3

DIOPT Version :9

• Sequence 1: NP_001262870.1
• Gene: orb / 42752
• FlyBaseID: FBgn0004882
• Length: 915
• Species: Drosophila melanogaster
• Sequence 2: XP_009305819.1
• Gene: cpeb3 / 100005268
• ZFINID: ZDB-GENE-090312-68
• Length: 644
• Species: Danio rerio
• Alignment Length: 694
• Identity: 184/694 - (26%)
• Similarity: 284/694 - (40%)
• Gaps: 180/694 - (25%)

  Fly   237 DYFQFENVAQSNPLKAFQRTNISFDCSAPLSPSTPTSIYNRSFHSSPLVSDSSNSSSGIGLSMDS 301
            |....::.||.:|.:         |.|....|||||.       |.|.:.|..:
Zfish    39 DLLMDKSKAQPHPHQ---------DPSNTEPPSTPTP-------SEPPILDEQH----------- 76

  Fly   302 INMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANASTRSNSPESQNSSNSTTEQNLLD---MI 363
             ::.::::...:.|...|   ||....|.|            ||    |..||...|.:|   ..
Zfish    77 -HVGHSERLAMESPVLPG---LGFPQDSSL------------SP----SFGSTWSTNTVDEGFFQ 121

  Fly   364 NLLSVNSNKI----PHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQLQQQFVNLNR--------- 415
            .:.|||...:    ||............|.:    :..|.|.|::....|.: :|:
Zfish   122 GIPSVNGTMLFQNFPHHVNPVYGGNFSPQMR----RSPLGVNQRNPYSHQTL-INKVAASSASSS 181

  Fly   416 ---NYEQQISANLGSQQHGFE-HNGVGVGASS--------------------------------- 443
               |::..:.::..:...|.: ..|:|:...|
Zfish   182 AWNNHQNAVWSSAANPWSGRDPRRGLGLSVPSPLNPISPTKKPFPSTVIAPPKYQRPGALQKPWM 246

  Fly   444 ---------SGNEN----------CFSQYNLENITSVDMELAKLQNLQRINTLKLLHAQAQQMPL 489
                     :.|.|          .|..:||:.:.:..|::.|..:      .|..|..|...|:
Zfish   247 ISDPPEPFRTDNSNNMLPFQDRNRPFDPFNLQTLENSLMDMIKNDH------DKGKHHPAAGPPM 305

  Fly   490 -INQLL--QSYAGNAIGSVGGSNLGNLMSAGGSSLMTEMAGNVGG--------IITTNDGHLDRV 543
             |..:|  ..:||..     |.|..:.::.....|.|...|...|        .:..:||..|:.
Zfish   306 TIADILWRNHFAGRM-----GLNFHHPVAEHILPLNTRSFGRRRGRSSLFPFEDVFLDDGQGDQS 365

  Fly   544 AKFYKSSAALCDATCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPG 608
            .....||.:.|.           ...||..||.|||:||:|.||.|..:...|:.||.:.|:||.
Zfish   366 LTPGLSSPSRCQ-----------NGERMERYSRKVFVGGLPPDIDEDEITNSFRRFGHLVVDWPH 419

  Fly   609 KEQQAA--QPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWII 671
            |.:..:  .||||.:::|:.:..|:||:.||:     ...|:.|.. :||..||.|.|::.||.:
Zfish   420 KAESKSYFPPKGYAFLLFQEESSVQALIDACI-----EEDGKLYLC-VSSPTIKDKPVQIRPWNL 478

  Fly   672 ADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTD-KYKYPIGSGRVT 735
            :||:||...||.|||.||:|||.:...|.|..|..|||.|:.||.||||||| :.|||.|:|||.
Zfish   479 SDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA 543

  Fly   736 FSNFRSYMKAVSAAFIEIRTTKFTKKVQVDPY-LEDALC-----SICGVQHGPYYCRELSCFRYF 794
            |||.:||:.|:||.|::::.....|:|:|.|| |:|.:|     |.||.:..|::|..::|.:|:
Zfish   544 FSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGSRCGGKFAPFFCANVTCLQYY 608

  Fly   795 CRSCWQWQHSCDIVKNHKPLTRNSKSQSLVGIGPSSSNVSLPFS 838
            |..||...||....:.||||.:..        |....:||..:|
Zfish   609 CEYCWASIHSRAGREFHKPLVKEG--------GDRPRHVSFRWS 644

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
orb	NP_001262870.1	CEBP1_N	<540..570	CDD:292978	4/29 (14%)
		RRM1_CPEB1	574..674	CDD:241167	38/101 (38%)
		RRM2_CPEB1	685..770	CDD:241169	45/86 (52%)
		CEBP_ZZ	762..817	CDD:292976	23/60 (38%)
cpeb3	XP_009305819.1	RRM	<383..549	CDD:223796	78/171 (46%)
		RRM1_CPEB2_like	387..478	CDD:241168	36/96 (38%)
		RRM2_CPEB2_like	495..575	CDD:241170	40/79 (51%)
		CEBP_ZZ	570..631	CDD:292976	23/60 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0129
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.810