DRSC/TRiP Functional Genomics Resources

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Protein Alignment wda and RAD28

DIOPT Version :10

Sequence 1:NP_651136.1 Gene:wda / 42750 FlyBaseID:FBgn0039067 Length:743 Species:Drosophila melanogaster
Sequence 2:NP_010313.3 Gene:RAD28 / 851594 SGDID:S000002437 Length:506 Species:Saccharomyces cerevisiae


Alignment Length:449 Identity:80/449 - (17%)
Similarity:157/449 - (34%) Gaps:110/449 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 TLKSATEQILKSQVELPRFLRISERSR-----------GLTSAHLDPSECHMLAGFDNSAVQLWQ 419
            |::|..|:||:..:...:..|.|::|.           |:....:|.:...:|.|.|:.::.:|.
Yeast    21 TIQSEFERILEDPLSNMKNYRFSKQSNYSTKEKTPLSIGVNCLDIDDTGQVLLGGGDDGSLSIWG 85

  Fly   420 LNQSYCRGKSFYRRYPQKRCPWELNNCANQEEETDED--------------SSDEDVKCSEEERR 470
            |::|..|.....:....||    ||....|..::|::              :.:..::.....:.
Yeast    86 LDESLHRNDEGEQELINKR----LNYIKRQPHQSDDEPAQIMGYKNKRTRINDNNTMRLVHSFQT 146

  Fly   471 ERNRARHCK-----------YADNSYNEYGGF-----------QLRGHTKGVTDVR-FSAHYPLM 512
            :||:.|..:           :..|..:...||           .:..|..|:|.:: :.|...:.
Yeast   147 QRNKYRMYRQSSAAVPVQRSHISNKTDSPIGFSETLSETDSEASISHHKYGITTLKWYKADNGMF 211

  Fly   513 YSVSKDATMRCWRAHNLHCAAIYRSHNYPIWCLDESPV--GQYVVTGSKDLSARLWSLEKEHALI 575
            ::.|.|.|::.|..:... |....:..|.|..:|.:.|  ...:|..|:|...||..|...::.:
Yeast   212 FTGSNDKTVKIWDTNRFE-AVQDINLGYKINQIDNNVVDDSSLLVVASEDYYPRLIDLRTMNSGV 275

  Fly   576 IYAG------HTQDVECVAFHP-NGNYIATGSADHSVRLW------------CATSGKLMRVFAD 621
            ...|      ...::.|..|:| ....||.|..:..|:||            .....:...:..|
Yeast   276 TALGMGNQTRMQSEILCCKFNPVREQIIACGDMEGGVKLWDLRMRNRLYSELKRNKNRFKTINND 340

  Fly   622 CRQAVTQLAFSPDGKMLAAAGEETKVRIFDLAAGAQLAELKDHSASISSLSWSTHNRHLATACSD 686
            .....:.:.||.:                         :.|.|....|.:.|::....|.:...|
Yeast   341 DNDDQSDVYFSSN-------------------------QSKAHLRCCSDIVWNSEGSELCSVGMD 380

  Fly   687 GTLRLW----DIKKLSPMSDNSSAGSSSSATTNRVLTVNSSCQRLVDVFYGTSKTLYCI 741
            |.|.:|    :|.:...::..|..|:..   .:|:.......:||:    ...|.|.||
Yeast   381 GKLNVWRPFTEILQPEGLASYSQLGTQD---LSRIKYKKRVSRRLL----WFDKFLLCI 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdaNP_651136.1 TAF5_NTD2 104..273 CDD:471824
WD40 <493..695 CDD:441893 41/227 (18%)
WD40 repeat 501..537 CDD:293791 7/36 (19%)
WD40 repeat 542..578 CDD:293791 9/37 (24%)
WD40 repeat 585..619 CDD:293791 9/46 (20%)
WD40 repeat 626..662 CDD:293791 2/35 (6%)
RAD28NP_010313.3 WD40 repeat 61..102 CDD:293791 8/40 (20%)
WD40 repeat 108..170 CDD:293791 5/61 (8%)
WD40 <190..387 CDD:475233 40/222 (18%)
WD40 repeat 198..233 CDD:293791 7/35 (20%)
WD40 repeat 241..279 CDD:293791 8/37 (22%)
WD40 repeat 290..351 CDD:293791 10/60 (17%)
WD40 repeat 362..388 CDD:293791 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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