DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wda and rig

DIOPT Version :9

Sequence 1:NP_651136.1 Gene:wda / 42750 FlyBaseID:FBgn0039067 Length:743 Species:Drosophila melanogaster
Sequence 2:NP_611499.3 Gene:rig / 37335 FlyBaseID:FBgn0250850 Length:1235 Species:Drosophila melanogaster


Alignment Length:673 Identity:130/673 - (19%)
Similarity:218/673 - (32%) Gaps:220/673 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 TRLEAAESDD--TVAHFRSSKYELHTTAVVVNRICAYLQRRGHVLIMNLLYTWLHVHIVENEQRA 278
            |:.:||||||  .:.:|...:||....                               :...:|.
  Fly   255 TKSKAAESDDPFDIYNFDHLEYEFGAP-------------------------------IAERRRK 288

  Fly   279 FSED---HLLGL--------------TDDLEGE---DGEDDVVSKPAVTLNTRGDIRPSKSLTEK 323
            .|||   ..:||              .:.::.|   ..::|......|||:.....:|:..|::.
  Fly   289 SSEDCGGEFVGLEKPAGAAVLDFVEACESVKAELLASRQEDKTQHVEVTLHDCEPTKPTGPLSDA 353

  Fly   324 S--NRKRPAEEPN------IMLETDIKQEVETDESAELSKLQL--NIDACLDTLKSATEQILKS- 377
            |  :.|..|.:..      |...:.....|..|..|...|.::  :|....:...|.|.| .|| 
  Fly   354 STISNKNDASDSTEGSLEVIQYSSSSDDAVIVDGEAAKPKREVLHHIYHQAEVHASGTPQ-TKSE 417

  Fly   378 -QVELPRFLRISERSRGLT---SAHLDPSECHMLAGFDNSAV-QLWQLNQSYCRGKSFYRRYPQK 437
             |..|.....||..:..||   |.||:.    :|...|...| .:|..|.....||:    |.:.
  Fly   418 PQSNLQVVPAISAETISLTSVNSTHLET----LLVSIDGDEVMMIWNTNTGAHAGKN----YSKS 474

  Fly   438 RCPWELNNC--ANQEEETDEDSSDEDVKCSEEERR------ERNRARHC------KYADNSYNE- 487
            :...:|||.  .|.................|.||:      .::::..|      .:|.:|..| 
  Fly   475 KTAGKLNNVYWLNNHVIVSLSRHQLFFWSVEFERKMLRYKISKDKSHSCHLQDIVSFACDSSKEM 539

  Fly   488 -----------------------YG--GFQLRGHTK----------GVTDVRFSAHYPLMYSVSK 517
                                   ||  .|.:|...:          |.:|.|.:     .:.:||
  Fly   540 IWLCRNNRQIGMMNPKTGRMADFYGTVAFGVRAMAECPDDMNKIALGCSDRRVA-----FFDISK 599

  Fly   518 DATMRCWRAHNLHCAAIYRSHNYPIWCLDESPVGQYVVTGSKDLSARLWSLEK---------EHA 573
             .|..|     |...::|.|.|  ::||..||....:..|:.|.:..:..:|:         .|.
  Fly   600 -LTTSC-----LPIDSVYVSSN--VYCLAWSPNCLELAFGTFDGTVGILDVERMKVKTHLRTPHK 656

  Fly   574 LIIYAGHTQD-------------------------VECVAFHPN-----GNYIATGSADHSVRLW 608
            ..:|:...||                         |.|:: .|:     .:::..|:.|..:::.
  Fly   657 KEVYSLVWQDHFIYFIVNRVLGFFDLRKSKIEPTIVNCIS-RPSYLSIRDSFLFVGTDDGLLQIH 720

  Fly   609 CATSG------KLMRVFADCRQAVTQLAFSP-DGKMLAAAGEETKVRIFDLAAGAQLAE------ 660
            ...||      ..:|..|...:.||.:|:.| |....|.:|.:..|.:.:.    |..|      
  Fly   721 ERDSGMEKSWSPFIRQSALFARYVTDIAWCPLDSNKFAVSGNDRSVYVMEF----QPTERNWKTL 781

  Fly   661 ----LKDHSASISSLSWSTHNRH-LATACSDGTLRLWDIKKLSPMSDNSSAGSSSSATTNRVLTV 720
                .....|||:|:.||...:| |.|...:|.:.||                :.:|.....||:
  Fly   782 HTFTANTEKASITSMRWSHTQKHLLLTFHIEGKVCLW----------------NCNAPEKPPLTI 830

  Fly   721 NSSCQRLVDVFYGTSKT-LYCIG 742
            ...|.....:|..|::. :.|.|
  Fly   831 TYHCPMWCGMFLPTNENIIMCSG 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdaNP_651136.1 TAF5_NTD2 104..273 CDD:298747 10/58 (17%)
WD40 324..>700 CDD:225201 99/498 (20%)
WD40 491..700 CDD:238121 55/275 (20%)
WD40 repeat 501..537 CDD:293791 8/35 (23%)
WD40 repeat 542..578 CDD:293791 8/44 (18%)
WD40 repeat 585..619 CDD:293791 7/44 (16%)
WD40 repeat 626..662 CDD:293791 10/46 (22%)
rigNP_611499.3 WD40 <80..>215 CDD:295369
WD40 80..>215 CDD:225201
WD40 repeat 116..160 CDD:293791
WD40 repeat 167..204 CDD:293791
WD40 434..821 CDD:225201 81/428 (19%)
WD40 446..719 CDD:295369 50/290 (17%)
WD40 613..874 CDD:295369 52/264 (20%)
WD40 repeat 617..654 CDD:293791 7/36 (19%)
WD40 repeat 659..691 CDD:293791 3/31 (10%)
WD40 repeat 693..732 CDD:293791 6/39 (15%)
WD40 repeat 744..785 CDD:293791 10/44 (23%)
WD40 repeat 793..831 CDD:293791 13/53 (25%)
WD40 repeat 838..861 CDD:293791 4/16 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4155
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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