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Protein Alignment CG4467 and Lnpep

DIOPT Version :10

Sequence 1:	NP_001036747.1	Gene:	CG4467 / 42747	FlyBaseID:	FBgn0039064	Length:	1125	Species:	Drosophila melanogaster
Sequence 2:	NP_001106874.1	Gene:	Lnpep / 171105	RGDID:	621752	Length:	1025	Species:	Rattus norvegicus

Alignment Length:	1156	Identity:	281/1156 - (24%)
Similarity:	489/1156 - (42%)	Gaps:	232/1156 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    22 DGIELEP---------LGGEKCDKD-KDKDKEKQTNGVTFGGESSGGRQTRTGV-----AVCS-- 69
            |.:|.||         ||..:.|:| :|.:...:..|::|...|||.|.:.||.     ..||
  Rat    42 DEVEYEPRGSRLLVRGLGEHEMDEDEEDYESSAKLLGMSFMNRSSGLRNSATGYRQSPDGTCSVP 106

  Fly    70 QRRALLVAGIVLGSLLLTAIIIAYAGPQNDCSCGSKTVSGYETDEENNTQPFNPIATNGEPFPWL 134
            ..|.|::...|: .:.::.|::.|..|:    |.......::|::  :.:...||||||:.|||.
  Rat   107 SARTLVICVFVI-VVAVSVIMVIYLLPR----CTFTKEGCHKTNQ--SAELIQPIATNGKVFPWA 164

  Fly   135 EKMLPTSVRPLRYMVTIHPNLTTLDVKGQVTIDLHVEKETNFIVLHIQDLNVTEKAIVTPGPKGY 199
            :..|||::.|.||.:::|||||::..:|.|||.|...::|..|:||....|::....::
  Rat   165 QIRLPTAIIPQRYELSLHPNLTSMTFRGSVTISLQALQDTRDIILHSTGHNISSVTFMS------ 223

  Fly   200 AL----KIVKVLEFPPRQQLYIEVKERLKKKSNYTLNLRWYSKLNPEPEGFYVDQYESSNGVERL 260
            |:    |.|::||:|..:|:.:...|.|....||||.:.:.:.::....|||...|...:..::.
  Rat   224 AVSSQEKQVEILEYPYHEQIAVVAPESLLTGHNYTLKIEYSANISNSYYGFYGITYTDKSNEKKN 288

  Fly   261 LAATVFRPNGARRAFPCFDEPHVRAPFRISVFRDRFHIGLSN----SIVHTTEDVGFYMGTGLLR 321
            .|||.|.|..||.||||||||..:|.|.|.:.||..|..|||    |.|.|.|        ||::
  Rat   289 FAATQFEPLAARSAFPCFDEPAFKATFIIKITRDEHHTALSNMPKKSSVPTEE--------GLIQ 345

  Fly   322 DDFIETPPLPADAVAWVVSDFQRESLQPSAAYIPTTPAPPGSGVGGKKSAQLNNYTQLKGKNPPV 386
            |:|.|:..:....||::|.:.:
  Rat   346 DEFSESVKMSTYLVAFIVGEMR------------------------------------------- 367

  Fly   387 RNITALTHSLNVNLTPRQNLTVVQPTTTTAWPVNLNGNGKPSNLTSLSQSTGSSIKRAPSYTFYA 451
                        ||:...|.|:|                                      :.||
  Rat   368 ------------NLSQDVNGTLV--------------------------------------SVYA 382

  Fly   452 PRDLLIRSSFILHTSRDVLEYLQTWLDISYPLTKVDFVALPSLDRNMISSLGLVTLK-------- 508
            ..:.:.:....|.|:..:||:.|.:.:|.|||.|:|.||:|..:...:.:.||:|.:
  Rat   383 VPEKIDQVYHALDTTVKLLEFYQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLYDN 447

  Fly   509 -TSFLTDPSSITSEQYQFSALRIAEAMVRQFFGGITSRKVLKDVWLWEGLIQYLGIHALAPLQET 572
             ||.:.|...:|.        .||..:..|:||.:.:.:...|:||.||...::...::..:.:.
  Rat   448 ATSSVADRKLVTK--------IIAHELAHQWFGNLVTMQWWNDLWLNEGFATFMEYFSVEKIFKE 504

  Fly   573 WPLREMYL-LKMATAALDIDAIQGWDSIMNGTSHDGNNEEFFVQ----KTAAIFSMLHTAIGEDR 632
            ....|.:| .:..|  :..|::.....|.:........||.|..    |.|::..||.:.:.||.
  Rat   505 LNSYEDFLDARFKT--MRKDSLNSSHPISSSVQSSEQIEEMFDSLSYFKGASLLLMLKSYLSEDV 567

  Fly   633 FRGCLGSFLKVNRFRTAEPTDLWTICTKKANGSKNIKDMMTLWTHQPGFPLLTVTKMGNSISISQ 697
            |:..:..:|..:.:...:..|||....:....:.::|.||..||.|.||||:||.:.|..:.:.|
  Rat   568 FQHAIILYLHNHSYAAIQSDDLWDSFNEVTGKTLDVKKMMKTWTLQKGFPLVTVQRKGTELLLQQ 632

  Fly   698 RPFRPAEFLAIHDDSYDGNNYNKTTLNATDMPSTVATTTQGSKHKVAPHMKWIFPVTYVTDINNV 762
            ..|.|:....|.|..                               ..|: |..|::||||..|.
  Rat   633 ERFFPSMQPEIQDSD-------------------------------TSHL-WHIPISYVTDGRNY 665

  Fly   763 SE----TLWMQNVDVTFNVPENVKWIKVNAIQNGYYRVVYNDDNWASLIEELAANPNRFTSEDRL 823
            ||    :|..:..|| .|:.|.|:|:|||....|||.|.|..|.||:||.:|..||...:.:||.
  Rat   666 SEYRSVSLLDKKSDV-INLTEQVQWVKVNTNMTGYYIVHYAHDGWAALINQLKRNPYVLSDKDRA 729

  Fly   824 GMLSDAFTLCHANLLPCEITMNMIQYLPSETHYGPMALAL-------RHLEKWRRILKYSECFLM 881
            .::::.|.|.....:|.::..::|.||.:|||..|:..||       ..|||    |.:.:....
  Rat   730 NLINNIFELAGLGKVPLQMAFDLIDYLRNETHTAPITEALFQTDLIYNLLEK----LGHMDLSSR 790

  Fly   882 LSEFIKMKISTVMEKVGWSDDGDVATRLLRPEVLLASVLWEDIDSITKAKNMLNQYLYYNGT-AI 945
            |...:...:...:::..|:|:|..:.|.||..:|..:......:..|.|..:.:.::..||| ::
  Rat   791 LVTRVHKLLQNQIQQQTWTDEGTPSMRELRSALLEFACAHSLENCTTMATKLFDGWMASNGTQSL 855

  Fly   946 PPNLREVVYTGSILSGEYIYWQHCWERFVNLQRTSETFVERMQLLRALGRTKDA----WLQNRLL 1006
            |.::...|:.....:      :..|....::..:..:..|:.::|.||..:.||    ||....|
  Rat   856 PTDVMTTVFKVGART------EKGWLFLFSMYSSMGSEAEKDKILEALASSADAHKLYWLMKSSL 914

  Fly  1007 SHVTMLPTEEVVQVLKAIAGTPTGGAMACRFLQAKWFELEKRLGPGTISFAKVISAITQYGATKF 1071
            .. .::.|:::..:::.:.....|..:|..|::..|.:|..:...|:.:...:::..|...:||.
  Rat   915 DG-DIIRTQKLSLIIRTVGRQFPGHLLAWDFVKENWNKLVHKFHLGSYTIQSIVAGSTHLFSTKT 978

  Fly  1072 DYDELKSLVHRFGRGHGMSVLNM-----TLSSVASNVEWVARSQTSLYKWV 1117
            ...|    |..|......:.|.:     ....:..|::|:||:..:|..|:
  Rat   979 HLSE----VQEFFENQSEATLQLRCVQEAFEVIELNIQWMARNLKTLTLWL 1025

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.