DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cnc and bach2

DIOPT Version :9

Sequence 1:NP_001262864.1 Gene:cnc / 42743 FlyBaseID:FBgn0262975 Length:1430 Species:Drosophila melanogaster
Sequence 2:XP_002940359.1 Gene:bach2 / 100485849 XenbaseID:XB-GENE-994313 Length:829 Species:Xenopus tropicalis


Alignment Length:546 Identity:121/546 - (22%)
Similarity:185/546 - (33%) Gaps:146/546 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   789 HLTNSSHEADGAAAAAAAYKVEHDL------------------------MYYGNTSSDINQTDGF 829
            ::.|:||...|..:..:....|..|                        :......:||...||.
 Frog   247 NVDNASHSTSGLTSTFSEQNSETGLKPGFPLNQIKSEPRDDDNEEESITLCLSGDETDIGDKDGD 311

  Fly   830 INSIFTDEDLHLMDMNESF----CRMVDNSTSNNSSVLGLP--SSGHVSNGSGSSAQ-------- 880
            :..:........:|..:|.    |.....|.:..:.::..|  |..|.:.......:        
 Frog   312 VEMVRKQPSPVCIDNPKSVSSPSCLRTFFSRTKGAEIIDFPAASQQHFARSPACPVEKRATQGDH 376

  Fly   881 -------LGAGNPHGNQANGASGGVGSMSGSAVGAGATGMTADLLASGGAGAQGGADRLD--ASS 936
                   :|...||.:.||.........|||.:   |:....:|.......:....|::.  ..|
 Frog   377 KTEYNSFIGNFEPHKDSANFLIASPLRGSGSEL---ASKHEVELDRRSVIFSSSACDQISTPVQS 438

  Fly   937 DSAVSSMG---SERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKK 998
            .|.||.:.   ||.||.   |.|..||.|....|...:.|              ....|      
 Frog   439 YSGVSCLDKEFSEHVPK---GLWAGGSQSLPSSHAFSHSG--------------LVADP------ 480

  Fly   999 HQLYGKRDPHKQTPSALP--PTAPP-AAATAVQSQSIKYEYDAGYASSGMASGG----------I 1050
              |.|:..|:...|..:.  |.:|| ...|...|....|    .||..|  |||          .
 Frog   481 --LPGRLRPNPSCPVPIKVCPRSPPLETRTRTSSSCSSY----SYAEDG--SGGSPCSLPLCEFS 537

  Fly  1051 SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYT-VRPSPRTSQDLVQLNHTYSLPQGSGSLPRP 1114
            |.|.:.||....: .|.:...|        .||. |||..:..|                     
 Frog   538 SSPCSQGPRFPTN-DHQEVCSM--------ADYNQVRPQIKCEQ--------------------- 572

  Fly  1115 QARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEEHLTRDEKRARSLNIPISVPDIINLPMDEF 1179
                          |.|.   |||...|:.|..:.|.....: |...:.:|..:..|.:||.::|
 Frog   573 --------------SYGT---NSSDESGSFSEADSESCPVQD-RGHEVKLPFPIDQITDLPRNDF 619

  Fly  1180 NERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHL 1244
            ...:..:.||..||..|.|:|||.||::|||.|||||||.|..||.|::.:|..|.:|..:|:.|
 Frog   620 QMMIKMHKLSSEQLEFIHDVRRRSKNRIAAQRCRKRKLDCIQNLECEIHKLVCEKEKLLTERNQL 684

  Fly  1245 ESERKRISNKFAMLHRHVFQYLRDPE 1270
            ::....:.:.|:.|.:.|.:.::.||
 Frog   685 KACMGELLDNFSCLSQEVCRDIQSPE 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cncNP_001262864.1 bZIP_CNC 1192..1259 CDD:269846 29/66 (44%)
coiled coil 1193..1255 CDD:269846 27/61 (44%)
bach2XP_002940359.1 BTB_POZ_BACH2 21..144 CDD:349587
bZIP_BACH 629..699 CDD:269867 30/69 (43%)
coiled coil 633..695 CDD:269867 27/61 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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