DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CenB1A and ArfGAP1

DIOPT Version :9

Sequence 1:NP_524458.1 Gene:CenB1A / 42735 FlyBaseID:FBgn0039056 Length:828 Species:Drosophila melanogaster
Sequence 2:NP_524040.2 Gene:ArfGAP1 / 39417 FlyBaseID:FBgn0020655 Length:468 Species:Drosophila melanogaster


Alignment Length:458 Identity:105/458 - (22%)
Similarity:162/458 - (35%) Gaps:125/458 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   377 PAKRRIHWEEFLKIPGNAYCCDCRSPEPRWASINLGITLCIECSGVHRSLGVHYSKVRSLTLDAW 441
            |..||: .:|......|:.|.:|.:..|:|.|:..||.:|:||||.|||||||.|.|||:|:|.|
  Fly     4 PRTRRV-LQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFVRSVTMDKW 67

  Fly   442 ESENVKVMMELGNEVVNRIYEARIGDDCGLKKPTEQCEIGVREAWIKAKYVERRFVCGMPKPQEL 506
            :...::.|...||.......|.:  :|...:.|..| ....:.|   |.|.::.......|..:|
  Fly    68 KDIELEKMKAGGNRNAREFLEDQ--EDWNERAPITQ-RYNSKAA---ALYRDKIATLAQGKSWDL 126

  Fly   507 LASE--TAEVLSIDSGGVVED---------GESGGSGIAKRATLSLGGTRKWAVKKLR------- 553
            ..::  .....|..|||....         |..|..|.........||.:::..::.:       
  Fly   127 KEAQGRVGSNNSFSSGGSSNSSYQSRPSATGYGGNGGYQNGGGAEPGGYQQYQTQEFKDQKEEFF 191

  Fly   554 -RRQKQRSI-----------------------PKTLSDD--PSIYNTAKTGDELEDDDDDESINI 592
             |||.:.:.                       |||.|.:  .|..:|..:|..|        .:.
  Fly   192 SRRQVENASRPENLPPSQGGKYAGFGFTREPPPKTQSQELFDSTLSTLASGWSL--------FST 248

  Fly   593 PSMSLSISRDDLLVIGDDLALDRLETPGILGSDQ--------ESTD---------GESDAESPE- 639
            .:..|:.:..:..|...:||..:::...:|.|.|        :.||         ..|:..||: 
  Fly   249 NASKLASTAKEKAVTTVNLASTKIKEGTLLDSVQCGVTDVASKVTDMGKRGWNNLAGSNISSPQG 313

  Fly   640 ---ELPFSQLDANQLLYMASVVHNLPVMCMAFALG-----ADKMWKNPQDRQRSFLHQAVIS--- 693
               :..|....|.|  ...||..||     |..||     :|..|...||...|..|....|   
  Fly   314 GYNDPNFEDSSAYQ--RSNSVGGNL-----AGGLGQQSGVSDSDWGGWQDNGNSKSHMTSSSSYH 371

  Fly   694 ---------GSVMACEFLLLNGAAIDAVDEMGYSALHISTAKGHIAQVYLLLKHKAAYDLSSSDG 749
                     |:..|       |...|| |..|:.|.:..::             :.:|..:||.|
  Fly   372 NQLSSSSGGGTASA-------GLTRDA-DWSGFEATNYQSS-------------ETSYQNASSGG 415

  Fly   750 KKA 752
            ..|
  Fly   416 STA 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CenB1ANP_524458.1 BAR_ACAPs 18..217 CDD:153287
PH 259..352 CDD:278594
PH_ACAP 260..355 CDD:270070
ArfGap 384..497 CDD:279720 38/112 (34%)
ANK 652..768 CDD:238125 27/118 (23%)
Ank_4 683..736 CDD:290365 11/64 (17%)
ANK repeat 687..713 CDD:293786 7/37 (19%)
ANK repeat 715..746 CDD:293786 3/30 (10%)
ArfGAP1NP_524040.2 ArfGap 7..114 CDD:279720 40/113 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464113
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.