DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and lima1

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001072345.1 Gene:lima1 / 779798 XenbaseID:XB-GENE-987339 Length:715 Species:Xenopus tropicalis


Alignment Length:451 Identity:84/451 - (18%)
Similarity:150/451 - (33%) Gaps:102/451 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVPYCHVPCYGALFG-----P 63
            |..|.|.||..||..:....:|..|.||..|..:|:.|..|......||. |.:..||.     .
 Frog   354 CFSCQKTVYPMERLFANNQVYHNGCFRCSHCSTKLSLGTFASLHGTVYCK-PHFNQLFKSKGNYD 417

  Fly    64 QLFGHGTRVESHKSYGVKGAQKPTGAQANGPPLPRDHLESKLKVYNQFYDNKSLEIRSREVNNRL 128
            :.|||    :.||...|...:  |......|.....|:                   |::.::.:
 Frog   418 EGFGH----KPHKELWVNKTE--TSETEESPEQTTAHI-------------------SKDPSSPV 457

  Fly   129 VLEGALRVYWGVQGVIHLK----EDDDQRILVRKRNSCRVSKAANESSSDKENEASESLAPPTTT 189
            |.|..:.....:...:..|    :|.::::..::........|.:..:.....|..:.|.|....
 Frog   458 VEEAPIAKVGVLAASMEAKNSSAQDKEKQVETKRLKIAWPPPAESSGAGGSGEENIKVLRPKWPP 522

  Fly   190 TAEVDQLSTDVSLSESMTFDSCSLNEISELPTTPEDASANTTANSKEQTNGNVCNDDEDTTTTDS 254
            ..|:.::.|:..|.......|.||                     :|::...:.:          
 Frog   523 VEEIQKVETEEDLDLKKLRRSGSL---------------------RERSRAYILS---------- 556

  Fly   255 SGTLVEAPTASTSCVSSTLPSKLDRLEKLDWDDIDDLLQVERRHNDKDRIYETMPVKLPSSQSS- 318
                |..|..|...:.: ||:...:|:|                ::..::.:|. :|.|..:.| 
 Frog   557 ----VAKPVDSDKALDN-LPASPPKLKK----------------SNSFKLRDTW-IKKPEERQSV 599

  Fly   319 -SDSSPSKTSTETTTTTESSSTQSASTNTSSTDDFMTATGSLTANTNTQNTTTVSTTETSLDNFE 382
             .::.||:...:.:...|......|..    .|..:.:..........|..:...:||||..:.|
 Frog   600 EEENKPSQDIKDVSVVAEDKEANPADL----ADKVLESEDVSKIEVAEQQHSPEESTETSHSSLE 660

  Fly   383 TCDDATLKPIDFEDFKRSVHQDYVNGANSFTEPN-EGTLKRNQPIDPSRIHDSLKLYGENS 442
              |..:.|....|:.:||....|..| ..|.|.: |..:|||:..|    .|...:.||.:
 Frog   661 --DPVSPKNTSPEENRRSQDVGYWEG-EEFEELSVEDQIKRNRYYD----EDDEDVDGEEN 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 18/52 (35%)
UBQ 660..744 CDD:294102
Nore1-SARAH 762..799 CDD:293125
lima1NP_001072345.1 LIM_Eplin_alpha_beta 354..406 CDD:188869 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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